[Bio] / FigTutorial / connect_map_to_genes.py Repository:
ViewVC logotype

View of /FigTutorial/connect_map_to_genes.py

Parent Directory Parent Directory | Revision Log Revision Log

Revision 1.1 - (download) (as text) (annotate)
Thu Jun 10 14:51:56 2004 UTC (15 years, 8 months ago) by disz
Branch: MAIN
CVS Tags: merge-bodev_news-3, rast_rel_2014_0912, rast_rel_2008_06_18, rast_rel_2008_06_16, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, Root-bobdev_news, rast_rel_2008_09_30, caBIG-13Feb06-00, rast_rel_2010_0526, rast_rel_2014_0729, merge-trunktag-bobdev_news-1, rast_rel_2009_05_18, caBIG-05Apr06-00, rast_rel_2009_0925, rast_rel_2010_1206, rast_rel_2010_0118, caBIG-00-00-00, rast_rel_2009_02_05, rast_rel_2011_0119, rast_rel_2008_12_18, merge-trunktag-bodev_news-3, merge-bobdev_news-2, merge-bobdev_news-1, rast_rel_2008_10_09, rast_release_2008_09_29, rast_rel_2008_04_23, rast_rel_2008_08_07, rast_rel_2009_07_09, rast_rel_2010_0827, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, rast_rel_2008_10_29, rast_rel_2009_03_26, merge-trunktag-bobdev_news-2, rast_rel_2008_11_24, HEAD
Branch point for: Branch-bobdev_news
Python version of tutorial code

from FigKernelPackages import FIG2
import sys

fig = FIG2.FIG()

def die(msg):
	print msg

if len(sys.argv) != 3:
	die("usage: connect_map_to_genes Map Genome")

map = sys.argv[1]
genome = sys.argv[2]
name = fig.map_name(map);

print "%s\t%s" % (map, name)
roles = fig.map_to_ecs(map)
for role in roles:
    print role
    pegs = fig.seqs_with_role(role,"master",genome)
    for peg in pegs:
	func = fig.function_of(peg);
	print "    %s\t%s" % (peg, func[0][1])

MCS Webmaster
ViewVC Help
Powered by ViewVC 1.0.3