[Bio] / FigTutorial / SEED_administration_issues.html Repository:
ViewVC logotype

Diff of /FigTutorial/SEED_administration_issues.html

Parent Directory Parent Directory | Revision Log Revision Log | View Patch Patch

revision 1.17, Tue Apr 26 15:08:26 2005 UTC revision 1.18, Wed Jul 19 17:36:16 2006 UTC
# Line 823  Line 823 
823  <p>  <p>
824  To delete a set of genomes from a running version of the SEED, just use  To delete a set of genomes from a running version of the SEED, just use
825  <pre>  <pre>
826          fig delete_genomes G1 G2 ...Gn  (where G1 G2 ... Gn designates a list of genomes)          fig mark_deleted_genomes User G1 G2 ...Gn  (where G1 G2 ... Gn designates a list of genomes)
827  </pre>  </pre>
828  For example,  For example,
829  <pre>  <pre>
830          fig delete_genomes 562.1          fig mark_deleted_genomes RossO 562.1
831  </pre>  </pre>
832  could be used to delete a single genome with a genome ID of 562.1.  could be used to delete a single genome with a genome ID of 562.1.
 <p>  
 To make a copy with some genomes deleted to give to someone else requires a little different approach.  
 To extract a set of genomes from an existing version of the SEED, you need to run the command  
 <pre>  
         extract_genomes Which ExistingData ExtractedData  
 </pre>  
   
 The first argument is either the word "unrestricted" or the name of a file containing a list of  
 genome IDs (the genomes that are to be retained in the extraction).  The second argument is  
 the path to the current Data directory.  The third argument specifies the name of a directory  
 that is created holding the extraction.  Thus,  
 <pre>  
         extract_genomes unrestricted ~/FIGdisk/FIG/Data /Volumes/Tmp/ExtractedData  
 </pre>  
 would created the extracted Data directory for you.  If you wish to then produce a fully distributable  
 version of the SEED from the existing version and the extracted Data directory, you would  
 use  
 <pre>  
         make_a_SEED ~/FIGdisk /Volumes/Tmp/ExtractedData /Volumes/MyFriend/FIGdisk.ReadyToGo  
         rm -rf /Volumes/Tmp/ExtractedData  
 </pre>  
833    
834   <h2 id="reintegrate_sims">Periodic Reintegration of Similarities</h2>   <h2 id="reintegrate_sims">Periodic Reintegration of Similarities</h2>
835    

Legend:
Removed from v.1.17  
changed lines
  Added in v.1.18

MCS Webmaster
ViewVC Help
Powered by ViewVC 1.0.3