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revision 1.15, Tue Jan 25 22:57:46 2005 UTC revision 1.16, Tue Jan 25 23:01:46 2005 UTC
# Line 690  Line 690 
690  directory where it should be.  directory where it should be.
691  </ol>  </ol>
692  <p>  <p>
693    The above description will produce similarities using a single invocation of
694    blastall.  For most large genomes, and whenever you wish to process a batch of genomes,
695    you should use parallel processing while maintaining the spirit of the approach.
696  No matter how you produce the new similarities, they need to be added  No matter how you produce the new similarities, they need to be added
697  as a file in the <b>FIGdisk/FIG/Data/NewSims</b> directory.  Then, you  as a file in the <b>FIGdisk/FIG/Data/NewSims</b> directory.  Then, you
698  need to index these similarities using  need to index these similarities using

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