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that pass a test. The test is given by the command line arguments. If the command line contains a single |
that pass a test. The test is given by the command line arguments. If the command line contains a single |
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argument, it should be a file containing genome ids. In the case, the test amounts to "keep PEGs from |
argument, it should be a file containing genome ids. In the case, the test amounts to "keep PEGs from |
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genomes corresponding to those in the given file". If the command line arguments are of the form |
genomes corresponding to those in the given file". If the command line arguments are of the form |
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<i>-v File</>, then the test amounts to "keep only PEG ids from genomes other than those in the given file". |
<i>-v File</i>, then the test amounts to "keep only PEG ids from genomes other than those in the given file". |
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<li><b>step 4</b>: Now that we have a file on known machinery in genomes that probably do not have the original |
<li><b>step 4</b>: Now that we have a file on known machinery in genomes that probably do not have the original |
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form of the enzyme, we use |
form of the enzyme, we use |
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