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File (rev) Rev. Age Author Last log entry
 Parent Directory        
RAST_Supplement/        
DataMining.examples/        
why_use_the_SEED.html  1.1  14 years  overbeek  add a tutorial on finding relevant links
tyra_example.html  1.1  13 years  overbeek  add TyrA example to tutorials
tutorials.html  1.33  10 years  overbeek  took out point to HOPS
tut_abs.html  1.6  10 years  overbeek  an update to my abstract tutorial
test_subsystem.pl  1.1  10 years  disz  test driver for the subsystem server
test_should.pl  1.1  10 years  disz  test scripts for the streaming figfam server
test_prot.pl  1.1  10 years  disz  test scripts for the streaming figfam server
test_place.pl  1.1  10 years  disz  test scripts for the streaming figfam server
test_member.pl  1.1  10 years  disz  test scripts for the streaming figfam server
test_dna.pl  1.1  10 years  disz  test scripts for the streaming figfam server
test_allfam.pl  1.1  10 years  disz  test scripts for the streaming figfam server
test_all  1.1  10 years  disz  test scripts for the streaming figfam server
subsystems_notion.html  1.1  12 years  overbeek  add the writeup on the notion of subsystem
subsystem_tutorial2.html  1.6  14 years  overbeek  minor fix to subsystem tutorial
subsystem_tutorial.html  1.3  15 years  overbeek  fix bug in copying a subsystem
splitting_roles.html  1.1  13 years  overbeek  add little writeup on splitting functional roles
show_similarities.py  1.1  15 years  disz  Python version of tutorial code
show_similarities.pl  1.2  15 years  olson  clean up tutorial code
show_functional_coupling.py  1.1  15 years  disz  Python version of tutorial code
show_functional_coupling.pl  1.2  15 years  olson  clean up tutorial code
sequence_search.html  1.1  14 years  overbeek  Add sequence search help.
seq_utils.py  1.1  15 years  disz  Python version of tutorial code
seq_utils.pl  1.3  15 years  olson  clean up tutorial code
scan_for_matches_README.html  1.2  13 years  golsen  Don't mean to be pedantic, but I figured that I might as well add newlines at th...
scan_for_matches.html  1.1  14 years  overbeek  Add sequence search help.
replication.jpg  1.1  10 years  overbeek  an update to my abstract tutorial
prot  1.1  10 years  disz  test data for the figfam server test scripts
phylogeny.html  1.1  14 years  overbeek  add the phylogeny notes
list_complete_eukaryotic_genomes.py  1.1  15 years  disz  Python version of tutorial code
list_complete_eukaryotic_genomes.pl  1.2  15 years  olson  clean up tutorial code
gf2maps_and_subs.py  1.1  15 years  disz  New tutorial code in python
gf2maps_and_subs.pl  1.2  15 years  olson  clean up tutorial code
get_subsystem_cell.pl  1.2  15 years  olson  clean up tutorial code
genomes.ex.py  1.1  15 years  disz  Python version of tutorial code
genomes.ex.pl  1.2  15 years  olson  Remove tool_hdr-generated stuff. Remove ^M's.
foo.py  1.1  15 years  disz  Python version of tutorial code
features_around.py  1.1  15 years  disz  Python version of tutorial code
features_around.pl  1.2  15 years  olson  Remove tool_hdr-generated stuff. Remove ^M's.
expression.jpg  1.1  10 years  overbeek  an update to my abstract tutorial
exchange_of_assignments_and_annotations_Sept17_2004.html  1.2  15 years  overbeek  minor typos in exchange of annotations writeup
evidence_codes.html  1.7  12 years  parrello  Fixed a spelling error: "disambuating" to "disambiguating".
energy.jpg  1.1  10 years  overbeek  an update to my abstract tutorial
dna  1.1  10 years  disz  test data for the figfam server test scripts
cycle_files_image003.png  1.1  11 years  overbeek  add note on anotation cycle
cycle_files_image.gif  1.1  11 years  overbeek  updating figure of cycle in tutorial
contigs_for_genome.py  1.1  15 years  disz  Python version of tutorial code
contigs_for_genome.pl  1.2  15 years  olson  Remove tool_hdr-generated stuff. Remove ^M's.
connect_subsystem_to_genes_the_right_way.py  1.1  15 years  disz  more python tutorial code
connect_subsystem_to_genes_the_right_way.pl  1.1  15 years  olson  new one
connect_subsystem_to_genes.py  1.1  15 years  disz  Python version of tutorial code
connect_subsystem_to_genes.pl  1.2  15 years  olson  clean up tutorial code
connect_map_to_genes.py  1.1  15 years  disz  Python version of tutorial code
connect_map_to_genes.pl  1.2  15 years  olson  clean up tutorial code
compare_regions.html  1.3  14 years  overbeek  update compare_regions.html
code_to_invoke_compare_regions.html  1.1  13 years  overbeek  how to compare regions
bioinf_first_classes.html  1.4  14 years  overbeek  course description
bioinf_first_class_part2.html  1.2  14 years  overbeek  additions to class writeups
bioinf_first_class.html  1.1  14 years  overbeek  update notes in bio class
batch_assignments.pl  1.3  11 years  golsen  Move writing of assignment annotation from a case-by-case basis (and it was miss...
assignment1.html  1.2  15 years  overbeek  fix bug in copying a subsystem
annotations_of.py  1.1  15 years  disz  Python version of tutorial code
annotations_of.pl  1.2  15 years  olson  clean up tutorial code
annotation_clearinghouse.html  1.4  12 years  overbeek  update the to ACH writeup
add_link.py  1.1  15 years  disz  Python version of tutorial code
add_link.pl  1.2  15 years  olson  Remove tool_hdr-generated stuff. Remove ^M's.
abstract_coupling.html  1.1  13 years  overbeek  clean up help for abstract functional coupling
about_HOPSS.html  1.3  13 years  golsen  Don't mean to be pedantic, but I figured that I might as well add newlines at th...
UsingSigs.html  1.2  14 years  overbeek  update of tutorial
TheCycle.html  1.2  11 years  overbeek  updating figure of cycle in tutorial
SEED_functions.html  1.3  13 years  golsen  Don't mean to be pedantic, but I figured that I might as well add newlines at th...
SEED_administration_issues.html  1.18  13 years  overbeek  minor fix to SEED admin document
MetabolicReconstructions.html  1.2  13 years  golsen  Don't mean to be pedantic, but I figured that I might as well add newlines at th...
Makefile  1.7  11 years  olson  install all the other webpagy kind of things.
How_to_annotate_a_genome.html  1.1  11 years  overbeek  add description of anotating a genome
HOPSS_type.html  1.1  14 years  overbeek  the HOPSS stuff for the prototype web site
GettingStarted.html  1.3  15 years  overbeek  add some comments to assignment1
GenomeLog.html  1.1  13 years  overbeek  add documentation on the Genome Log
DataMining.html  1.5  13 years  overbeek  fix Data mining tutorial
API.html  1.4  11 years  golsen  Move writing of assignment annotation from a case-by-case basis (and it was miss...
AA3.jpg  1.1  10 years  overbeek  an update to my abstract tutorial
AA2.jpg  1.1  10 years  overbeek  an update to my abstract tutorial
AA1.jpg  1.1  10 years  overbeek  an update to my abstract tutorial
1KG_update.html  1.4  12 years  overbeek  fixes to the 1K update
1KG.html  1.5  13 years  golsen  Don't mean to be pedantic, but I figured that I might as well add newlines at th...

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