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File Rev. Age Author Last log entry (rev)
 Parent Directory        
RAST_Supplement/        
DataMining.examples/        
cycle_files_image.gif  1.1  11 years  overbeek  updating figure of cycle in tutorial
TheCycle.html  1.2  11 years  overbeek  updating figure of cycle in tutorial
annotation_clearinghouse.html  1.4  12 years  overbeek  update the to ACH writeup
UsingSigs.html  1.2  14 years  overbeek  update of tutorial
bioinf_first_class.html  1.1  14 years  overbeek  update notes in bio class
compare_regions.html  1.3  14 years  overbeek  update compare_regions.html
HOPSS_type.html  1.1  14 years  overbeek  the HOPSS stuff for the prototype web site
connect_subsystem_to_genes_the_right_way.pl  1.1  15 years  olson  new one
tutorials.html  1.32  11 years  overbeek  new annotation clearinghouse decsription
connect_subsystem_to_genes_the_right_way.py  1.1  15 years  disz  more python tutorial code
exchange_of_assignments_and_annotations_Sept17_2004.html  1.2  15 years  overbeek  minor typos in exchange of annotations writeup
subsystem_tutorial2.html  1.6  14 years  overbeek  minor fix to subsystem tutorial
SEED_administration_issues.html  1.18  13 years  overbeek  minor fix to SEED admin document
Makefile  1.7  11 years  olson  install all the other webpagy kind of things.
code_to_invoke_compare_regions.html  1.1  13 years  overbeek  how to compare regions
1KG_update.html  1.4  12 years  overbeek  fixes to the 1K update
subsystem_tutorial.html  1.3  15 years  overbeek  fix bug in copying a subsystem
assignment1.html  1.2  15 years  overbeek  fix bug in copying a subsystem
DataMining.html  1.5  13 years  overbeek  fix Data mining tutorial
bioinf_first_classes.html  1.4  14 years  overbeek  course description
API.html  1.3  14 years  redwards  correcting API.html
gf2maps_and_subs.pl  1.2  15 years  olson  clean up tutorial code
show_similarities.pl  1.2  15 years  olson  clean up tutorial code
connect_subsystem_to_genes.pl  1.2  15 years  olson  clean up tutorial code
connect_map_to_genes.pl  1.2  15 years  olson  clean up tutorial code
seq_utils.pl  1.3  15 years  olson  clean up tutorial code
list_complete_eukaryotic_genomes.pl  1.2  15 years  olson  clean up tutorial code
batch_assignments.pl  1.2  15 years  olson  clean up tutorial code
get_subsystem_cell.pl  1.2  15 years  olson  clean up tutorial code
annotations_of.pl  1.2  15 years  olson  clean up tutorial code
show_functional_coupling.pl  1.2  15 years  olson  clean up tutorial code
abstract_coupling.html  1.1  13 years  overbeek  clean up help for abstract functional coupling
tut_abs.html  1.5  11 years  overbeek  additions to my notes on the abstract tutorial
bioinf_first_class_part2.html  1.2  14 years  overbeek  additions to class writeups
subsystems_notion.html  1.1  12 years  overbeek  add the writeup on the notion of subsystem
phylogeny.html  1.1  14 years  overbeek  add the phylogeny notes
GettingStarted.html  1.3  15 years  overbeek  add some comments to assignment1
cycle_files_image003.png  1.1  11 years  overbeek  add note on anotation cycle
splitting_roles.html  1.1  13 years  overbeek  add little writeup on splitting functional roles
GenomeLog.html  1.1  13 years  overbeek  add documentation on the Genome Log
How_to_annotate_a_genome.html  1.1  11 years  overbeek  add description of anotating a genome
why_use_the_SEED.html  1.1  14 years  overbeek  add a tutorial on finding relevant links
tyra_example.html  1.1  13 years  overbeek  add TyrA example to tutorials
contigs_for_genome.pl  1.2  15 years  olson  Remove tool_hdr-generated stuff. Remove ^M's.
features_around.pl  1.2  15 years  olson  Remove tool_hdr-generated stuff. Remove ^M's.
add_link.pl  1.2  15 years  olson  Remove tool_hdr-generated stuff. Remove ^M's.
genomes.ex.pl  1.2  15 years  olson  Remove tool_hdr-generated stuff. Remove ^M's.
add_link.py  1.1  15 years  disz  Python version of tutorial code
annotations_of.py  1.1  15 years  disz  Python version of tutorial code
genomes.ex.py  1.1  15 years  disz  Python version of tutorial code
foo.py  1.1  15 years  disz  Python version of tutorial code
seq_utils.py  1.1  15 years  disz  Python version of tutorial code
features_around.py  1.1  15 years  disz  Python version of tutorial code
show_similarities.py  1.1  15 years  disz  Python version of tutorial code
show_functional_coupling.py  1.1  15 years  disz  Python version of tutorial code
connect_map_to_genes.py  1.1  15 years  disz  Python version of tutorial code
list_complete_eukaryotic_genomes.py  1.1  15 years  disz  Python version of tutorial code
contigs_for_genome.py  1.1  15 years  disz  Python version of tutorial code
connect_subsystem_to_genes.py  1.1  15 years  disz  Python version of tutorial code
gf2maps_and_subs.py  1.1  15 years  disz  New tutorial code in python
evidence_codes.html  1.7  13 years  parrello  Fixed a spelling error: "disambuating" to "disambiguating".
MetabolicReconstructions.html  1.2  14 years  golsen  Don't mean to be pedantic, but I figured that I might as well add newlines at th...
scan_for_matches_README.html  1.2  14 years  golsen  Don't mean to be pedantic, but I figured that I might as well add newlines at th...
SEED_functions.html  1.3  14 years  golsen  Don't mean to be pedantic, but I figured that I might as well add newlines at th...
1KG.html  1.5  14 years  golsen  Don't mean to be pedantic, but I figured that I might as well add newlines at th...
about_HOPSS.html  1.3  14 years  golsen  Don't mean to be pedantic, but I figured that I might as well add newlines at th...
scan_for_matches.html  1.1  14 years  overbeek  Add sequence search help.
sequence_search.html  1.1  14 years  overbeek  Add sequence search help.

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