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Revision 1.1.1.1 - (download) (as text) (annotate) (vendor branch)
Mon Feb 19 17:15:26 2007 UTC (13 years, 1 month ago) by olson
Branch: x, MAIN
CVS Tags: mgrast_dev_08112011, mgrast_dev_08022011, mgrast_dev_05262011, mgrast_dev_04082011, mgrast_version_3_2, mgrast_dev_12152011, mgrast_dev_06072011, mgrast_rel_2008_0806, mgrast_dev_10262011, mgrast_dev_02212011, mgrast_rel_2008_0923, mgrast_release_3_0, mgrast_dev_03252011, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, mgrast_dev_04012011, mgrast_rel_2008_0919, mgrast_rel_2008_1110, myrast_33, mgrast_rel_2008_0917, mgrast_dev_04052011, mgrast_dev_02222011, y, HEAD
Changes since 1.1: +0 -0 lines
Initial import

#!/usr/bin/perl -w

# rewritten with BioPerl

use strict;
use Bio::SeqIO;

my $file=shift || die "$0 <fasta file>";
my $dir=$file.".files";
if (-e $dir) {die "$dir already exists. Not overwriting"}
else {mkdir $dir, 0755}

my %seen;
my $sio=Bio::SeqIO->new(-file=>$file, -format=>"fasta");
while (my $seq=$sio->next_seq)
{
 my $id=$seq->id;
 $id =~ s/\s+/_/g;
 while ($seen{$id}) {print "$id already written, "; $id.="1"; print " now trying $id\n"}
 my $fout=Bio::SeqIO->new(-file=>">$dir/$id.fasta", -format=>"fasta");
 $seen{$id}=1;
 $fout->write_seq($seq);
}


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