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Revision 1.1.1.1 - (download) (as text) (annotate) (vendor branch)
Mon Feb 19 17:15:26 2007 UTC (12 years, 9 months ago) by olson
Branch: x, MAIN
CVS Tags: mgrast_dev_08112011, mgrast_dev_08022011, mgrast_dev_05262011, mgrast_dev_04082011, mgrast_version_3_2, mgrast_dev_12152011, mgrast_dev_06072011, mgrast_rel_2008_0806, mgrast_dev_10262011, mgrast_dev_02212011, mgrast_rel_2008_0923, mgrast_release_3_0, mgrast_dev_03252011, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, mgrast_dev_04012011, mgrast_rel_2008_0919, mgrast_rel_2008_1110, myrast_33, mgrast_rel_2008_0917, mgrast_dev_04052011, mgrast_dev_02222011, y, HEAD
Changes since 1.1: +0 -0 lines
Initial import

#!/usr/bin/perl -w

use strict;
use Bio::SeqIO;

my $file=shift;
my $dir=shift;
unless ($file && $dir) {die "$0 <genbank file> <dir to put separate files>"}

$dir =~ s/\/$//;
if (-e $dir) {die "$dir already exists"}
else {mkdir $dir, 0755}

my $si=Bio::SeqIO->new(-file=>$file, -format=>"genbank");
while (my $seq=$si->next_seq) {
 my $id=$seq->display_name;
 $id =~ s/\s+//g;
 my $so=Bio::SeqIO->new(-file=>">$dir/$id", -format=>"genbank");
 $so->write_seq($seq);
 $so->close;
}



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