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Revision 1.1.1.1 - (download) (as text) (annotate) (vendor branch)
Mon Feb 19 17:15:26 2007 UTC (12 years, 9 months ago) by olson
Branch: x, MAIN
CVS Tags: mgrast_dev_08112011, mgrast_dev_08022011, mgrast_dev_05262011, mgrast_dev_04082011, mgrast_version_3_2, mgrast_dev_12152011, mgrast_dev_06072011, mgrast_rel_2008_0806, mgrast_dev_10262011, mgrast_dev_02212011, mgrast_rel_2008_0923, mgrast_release_3_0, mgrast_dev_03252011, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, mgrast_dev_04012011, mgrast_rel_2008_0919, mgrast_rel_2008_1110, myrast_33, mgrast_rel_2008_0917, mgrast_dev_04052011, mgrast_dev_02222011, y, HEAD
Changes since 1.1: +0 -0 lines
Initial import

#!/usr/bin/perl -w


# reformat m 8 format for the blast summary page
use strict;

my $phage=&phage_data();

my $file=shift || die "file?";
if ($file =~ /gz$/) {open(IN, "gunzip -c $file |") || die "Can't open a pipe to $file"}
else {open(IN, $file)|| die "Can't opne $file"}

while (<IN>)
{
 my @a=split /\t/;
 my $genome;
 if ($a[1] =~ /^\d+$/) {$genome=$a[1]}
 elsif ($a[1] =~ /\_(\d+)$/) {$genome=$1}
 else {print STDERR "Can't parse $a[1] for a genome. Skipped\n"; next}
 print join("\t", $a[0], $a[1], $a[2], @{$phage->{$genome}}, $a[10], $a[11]);
}









sub phage_data {
my $genome={ 
1=>[1, "Streptococcus pyogenes phi 370.1 prophage", "NC_002737"],
2=>[2, "Streptococcus pyogenes phi 370.2 prophage", "NC_002737"],
3=>[3, "Streptococcus pyogenes phi 370.3-like prophage", "NC_003485"],
4=>[4, "Streptococcus pyogenes phi 370.3 prophage", "NC_002737"],
5=>[5, "Streptococcus pyogenes phi 370.4 prophage", "NC_002737"],
6=>[6, "Bifidobacterium longum phi BL1 prophage", "NC_004307"],
7=>[7, "Bacillus halodurans phi Bh1 prophage", "NC_002570"],
8=>[8, "Bacillus halodurans phi Bh2 prophage", "NC_002570"],
9=>[9, "Bacillus halodurans phi Bh3 prophage", "NC_002570"],
10=>[10, "Bacillus halodurans phi Bh4 prophage", "NC_002570"],
11=>[11, "Brucella melitensis 16M phi Bruc1 prophage", "NC_003317"],
12=>[12, "Escherichia coli phi CP-22 prophage", "NC_002655"],
13=>[13, "Escherichia coli phi CP-933 prophage", "NC_002655"],
14=>[14, "Escherichia coli phi 933C prophage", "NC_002655"],
15=>[15, "Escherichia coli phi CP-933H prophage", "NC_002655"],
16=>[16, "Escherichia coli phi CP-933I prophage", "NC_002655"],
17=>[17, "Escherichia coli phi CP-933K prophage", "NC_002655"],
18=>[18, "Escherichia coli phi CP-933M prophage", "NC_002655"],
19=>[19, "Escherichia coli phi CP-933N prophage", "NC_002655"],
20=>[20, "Escherichia coli phi CP-933Oa prophage", "NC_002655"],
21=>[21, "Escherichia coli phi CP-933Ob prophage", "NC_002655"],
22=>[22, "Escherichia coli phi CP-933Oc prophage", "NC_002655"],
23=>[23, "Escherichia coli phi CP-933Od prophage", "NC_002655"],
24=>[24, "Escherichia coli phi CP-933P prophage", "NC_002655"],
25=>[25, "Escherichia coli phi CP-933R prophage", "NC_002655"],
26=>[26, "Escherichia coli phi CP-933T prophage", "NC_002655"],
27=>[27, "Escherichia coli phi CP-933U prophage", "NC_002655"],
28=>[28, "Escherichia coli phi CP-933V prophage", "NC_002655"],
29=>[29, "Escherichia coli phi CP-933X prophage", "NC_002655"],
30=>[30, "Escherichia coli phi CP-933Y prophage", "NC_002655"],
31=>[31, "Escherichia coli phi CP073-1 prophage", "NC_004431"],
32=>[32, "Escherichia coli phi CP073-2 prophage", "NC_004431"],
33=>[33, "Escherichia coli phi CP073-3 prophage", "NC_004431"],
34=>[34, "Escherichia coli phi CP073-4 prophage", "NC_004431"],
35=>[35, "Escherichia coli phi CP073-5 prophage", "NC_004431"],
36=>[36, "Escherichia coli phi CP073-6 prophage", "NC_004431"],
37=>[37, "Escherichia coli phi CP073-7 prophage", "NC_004431"],
38=>[38, "Escherichia coli phi CP073-8 prophage", "NC_004431"],
39=>[39, "Escherichia coli phi CP4-44 prophage", "NC_000913"],
40=>[40, "Escherichia coli phi CP4-57 prophage", "NC_000913"],
41=>[41, "Escherichia coli phi CP4-6 prophage", "NC_000913"],
42=>[42, "Escherichia coli phi CPS-53 prophage", "NC_000913"],
43=>[43, "Escherichia coli phi CPZ-55 prophage", "NC_000913"],
44=>[44, "Vibrio cholerae phi CTXphi prophage", "NC_002505"],
45=>[45, "Caulobacter crescentus CB15 phi Cc1 prophage", "NC_002696"],
46=>[46, "Clostridium acetobutylicum phi Clo1 prophage", "NC_003030"],
47=>[47, "Clostridium acetobutylicum phi Clo2 prophage", "NC_003030"],
48=>[48, "Clostridium perfringens str. 13 phi Cpr1 prophage", "NC_003366"],
49=>[49, "Clostridium tetani E88 phi Cpt1 prophage", "NC_004557"],
50=>[50, "Clostridium tetani E88 phi Cpt2 prophage", "NC_004557"],
51=>[51, "Clostridium tetani E88 phi Cpt3 prophage", "NC_004557"],
52=>[52, "Escherichia coli phi DLP-12 prophage", "NC_000913"],
53=>[53, "Deinococcus radiodurans phi DR-1 prophage", "NC_001263"],
54=>[54, "Salmonella typhimurium phi Fels-1 prophage", "NC_003197"],
55=>[55, "Salmonella typhimurium phi Fels-2 prophage", "NC_003197"],
56=>[56, "Shigella flexneri phi Flex1 prophage", "NC_004337"],
57=>[57, "Shigella flexneri phi Flex10 prophage", "NC_004337"],
58=>[58, "Shigella flexneri phi Flex11 prophage", "NC_004337"],
59=>[59, "Shigella flexneri phi Flex2 prophage", "NC_004337"],
60=>[60, "Shigella flexneri phi Flex3 prophage", "NC_004337"],
61=>[61, "Shigella flexneri phi Flex4 prophage", "NC_004337"],
62=>[62, "Shigella flexneri phi Flex5 prophage", "NC_004337"],
63=>[63, "Shigella flexneri phi Flex6 prophage", "NC_004337"],
64=>[64, "Shigella flexneri phi Flex7 prophage", "NC_004337"],
65=>[65, "Shigella flexneri phi Flex8 prophage", "NC_004337"],
66=>[66, "Shigella flexneri phi Flex9 prophage", "NC_004337"],
67=>[67, "Haemophilus influenzae phi Flu prophage", "NC_000907"],
68=>[68, "Haemophilus influenzae phi FluMu prophage", "NC_000907"],
69=>[69, "Salmonella typhimurium phi Gifsy-1 prophage", "NC_003197"],
70=>[70, "Salmonella typhimurium phi Gifsy-2 prophage", "NC_003197"],
71=>[71, "Streptococcus agalactiae phi LambdaSa1 prophage", "NC_004116"],
72=>[72, "Streptococcus agalactiae phi LambdaSa2 prophage", "NC_004116"],
73=>[73, "Shewanella oneidensis phi LambdaSo prophage", "NC_004347"],
74=>[74, "Xanthomonas campestris phi Lf1 prophage", "NC_003902"],
75=>[75, "Xanthomonas campestris phi Lf2 prophage", "NC_003902"],
76=>[76, "Listeria innocua phi List-I1 prophage", "NC_003212"],
77=>[77, "Listeria innocua phi List-I2 prophage", "NC_003212"],
78=>[78, "Listeria innocua phi List-I3 prophage", "NC_003212"],
79=>[79, "Listeria innocua phi List-I4 prophage", "NC_003212"],
80=>[80, "Listeria innocua phi List-I5 prophage", "NC_003212"],
81=>[81, "Listeria innocua phi List-I6 prophage", "NC_003212"],
82=>[82, "Listeria monocytogenes phi List-M1", "NC_003210"],
83=>[83, "Listeria monocytogenesphi List-M2 prophage", "NC_003210"],
84=>[84, "Mesorhizobium loti phi Meso1 prophage", "NC_002678"],
85=>[85, "Mesorhizobium loti phi Meso2 prophage", "NC_002678"],
86=>[86, "Mesorhizobium loti phi Meso3 prophage", "NC_002678"],
87=>[87, "Haemophilus influenzae phi MiniFluMu prophage", "NC_000907"],
88=>[88, "Mycobacterium tuberculosis phi Mt1 prophage", "NC_002755"],
89=>[89, "Mycobacterium tuberculosis phi Mt2 prophage", "NC_002755"],
90=>[90, "Staphylococcus aureus phi Mu50A prophage", "NC_002758"],
91=>[91, "Staphylococcus aureus phi Mu50B prophage", "NC_002758"],
92=>[92, "Staphylococcus aureus phi Mu50C prophage", "NC_002758"],
93=>[93, "Shewanella oneidensis phi MuSo1 prophage", "NC_004347"],
94=>[94, "Shewanella oneidensis phi MuSo2 prophage", "NC_004347"],
95=>[95, "Escherichia coli phi T4", "NC_000866"],
96=>[96, "Pseudoalteromonas espejiana phi PM2", "NC_000867"],
97=>[97, "Streptococcus thermophilus phi Sfi19", "NC_000871"],
98=>[98, "Streptococcus thermophilus phi Sfi21", "NC_000872"],
99=>[99, "Lactobacillus phi adh", "NC_000896"],
100=>[100, "Escherichia coli phi VT2-Sa", "NC_000902"],
101=>[101, "Escherichia coli phi 933W prophage", "NC_000924"],
102=>[102, "Escherichia coli phi Mu", "NC_000929"],
103=>[103, "Secondary endosymbiont Pea Aphid phi APSE-1", "NC_000935"],
104=>[104, "Spiroplasma citri phi SVTS2", "NC_001270"],
105=>[105, "Yersinia enterocolitica phi YeO3-12", "NC_001271"],
106=>[106, "Escherichia coli phi 186", "NC_001317"],
107=>[107, "Escherichia coli phi alpha3", "NC_001330"],
108=>[108, "Pseudomonas aeroginosa phi Pf1", "NC_001331"],
109=>[109, "Escherichia coli phi I2-2", "NC_001332"],
110=>[110, "Escherichia coli phi fr", "NC_001333"],
111=>[111, "Mycobacterium phi L5", "NC_001335"],
112=>[112, "Sulfolobus shibatae phi 1", "NC_001338"],
113=>[113, "Acholeplasma phi MV-L1", "NC_001341"],
114=>[114, "Spiroplasma citri phi SpV1", "NC_001365"],
115=>[115, "Xanthomonas campestris phi Cf1c", "NC_001396"],
116=>[116, "Escherichia coli phi lambda", "NC_001416"],
117=>[117, "Escherichia coli phi MS2", "NC_001417"],
118=>[118, "Pseudomonas aeroginosa phi Pf3", "NC_001418"],
119=>[119, "Escherichia coli phi G4", "NC_001420"],
120=>[120, "Enteric bacteria phi PRD1", "NC_001421"],
121=>[121, "Escherichia coli phi 174", "NC_001422"],
122=>[122, "Bacillus subtilis phi PZA", "NC_001423"],
123=>[123, "Salmonella phi S13", "NC_001424"],
124=>[124, "Escherichia coli phi GA", "NC_001426"],
125=>[125, "Acholeplasma phi L2", "NC_001447"],
126=>[126, "Escherichia coli phi T7", "NC_001604"],
127=>[127, "Escherichia coli phi P4", "NC_001609"],
128=>[128, "Pseudomonas aeruginosa phi PP7", "NC_001628"],
129=>[129, "Haemophilus influenzae phi HP1", "NC_001697"],
130=>[130, "Lactococcus lactis phi c2", "NC_001706"],
131=>[131, "Escherichia coli phi K", "NC_001730"],
132=>[132, "Chlamydia psittaci phi chp1", "NC_001741"],
133=>[133, "Streptococcus pneumoniae phi Cp-1", "NC_001825"],
134=>[134, "Lactococcus lactis phi sk1", "NC_001835"],
135=>[135, "Bacillus subtilis phi SPBc2", "NC_001884"],
136=>[136, "Escherichia coli phi MX1", "NC_001890"],
137=>[137, "Escherichia coli phi P2", "NC_001895"],
138=>[138, "Mycobacterium phi D29", "NC_001900"],
139=>[139, "Escherichia coli phi N15", "NC_001901"],
140=>[140, "Methanobacterium thermoautotrophicum phi psiM2", "NC_001902"],
141=>[141, "Lactococcus lactis phi bIL170 prophage", "NC_001909"],
142=>[142, "Mycoplasma arthritidis phi MAV1", "NC_001942"],
143=>[143, "Escherichia coli phi If1", "NC_001954"],
144=>[144, "Vibrio cholerae phi fs-2", "NC_001956"],
145=>[145, "Streptomyces phi C-31", "NC_001978"],
146=>[146, "Chlamydia psittaci phi PhiCPG1", "NC_001998"],
147=>[147, "Escherichia coli phi Ike", "NC_002014"],
148=>[148, "Streptococcus thermophilus phi DT1", "NC_002072"],
149=>[149, "Escherichia coli phi HK022", "NC_002166"],
150=>[150, "Escherichia coli phi HK97", "NC_002167"],
151=>[151, "Chlamydia pneumoniae phi CPAR39 prophage", "NC_002180"],
152=>[152, "Streptococcus thermophilus phi 7201", "NC_002185"],
153=>[153, "Chlamydia psittaci phi 2", "NC_002194"],
154=>[154, "Streptococcus thermophilus phi Sfi11", "NC_002214"],
155=>[155, "Escherichia coli phi KU1", "NC_002250"],
156=>[156, "Staphylococcus aureus phi PVL", "NC_002321"],
157=>[157, "Vibrio parahaemolyticus phi VfO3K6", "NC_002362"],
158=>[158, "Vibrio parahaemolyticus phi VfO4K68", "NC_002363"],
159=>[159, "Salmonella typhimurium phi P22", "NC_002371"],
160=>[160, "Pseudomonas aeruginosa phi D3", "NC_002484"],
161=>[161, "Staphylococcus aureus phi PV83 prophage", "NC_002486"],
162=>[162, "Mycoplasma phi P1", "NC_002515"],
163=>[163, "Roseobacter phi SIO1", "NC_002519"],
164=>[164, "Methanothermobacter wolfeii prophage psiM100", "NC_002628"],
165=>[165, "Bdellovibrio bacteriovorus phi MH2K", "NC_002643"],
166=>[166, "Bacillus subtilis phi GA-1", "NC_002649"],
167=>[167, "Mycobacterium smegmatis phi Bxb1", "NC_002656"],
168=>[168, "Staphylococcus aureus phi SLT", "NC_002661"],
169=>[169, "Lactococcus lactis phi bIL285 prophage", "NC_002666"],
170=>[170, "Lactococcus lactis phi bIL286 prophage", "NC_002667"],
171=>[171, "Lactococcus lactis phi bIL309 prophage", "NC_002668"],
172=>[172, "Lactococcus lactis phi bIL310 prophage", "NC_002669"],
173=>[173, "Lactococcus lactis phi bIL311 prophage", "NC_002670"],
174=>[174, "Lactococcus lactis phi bIL312 prophage", "NC_002671"],
175=>[175, "Acinetobacter phi AP205", "NC_002700"],
176=>[176, "Lactococcus lactis phi Tuc2009", "NC_002703"],
177=>[177, "Escherichia coli phi HK620", "NC_002730"],
178=>[178, "Lactococcus lactis phi TP901-1", "NC_002747"],
179=>[179, "Lactococcus lactis phi BK5-T", "NC_002796"],
180=>[180, "Streptococcus pneumoniae phi MM1", "NC_003050"],
181=>[181, "Myxococcus xanthus phi Mx8", "NC_003085"],
182=>[182, "Streptococcus pyogenes phi NIH1.1", "NC_003157"],
183=>[183, "Sulfolobus islandicus phi fv1", "NC_003214"],
184=>[184, "Listeria monocytogenes phi A118", "NC_003216"],
185=>[185, "Pseudomonas aeruginosa phi CTX", "NC_003278"],
186=>[186, "Escherichia coli phi M13", "NC_003287"],
187=>[187, "Staphylococcus aureus phi ETA", "NC_003288"],
188=>[188, "Listeria phi 2389", "NC_003291"],
189=>[189, "Escherichia coli phi T3", "NC_003298"],
190=>[190, "Pseudomonas syringae phi 8L", "NC_003299"],
191=>[191, "Pseudomonas syringae phi 8M", "NC_003300"],
192=>[192, "Pseudomonas syringae phi 8S", "NC_003301"],
193=>[193, "Burkholderia thailandensis phi E125", "NC_003309"],
194=>[194, "Vibrio cholerae phi VSKK", "NC_003311"],
195=>[195, "Vibrio cholerae phi K139", "NC_003313"],
196=>[196, "Haemophilus influenzae phi HP2", "NC_003315"],
197=>[197, "Sinorhizobium meliloti phi PBC5", "NC_003324"],
198=>[198, "Vibrio phi VSK", "NC_003327"],
199=>[199, "Halorubrum coriense phi HF2", "NC_003345"],
200=>[200, "Escherichia coli phi P27", "NC_003356"],
201=>[201, "Mycobacterium avium phi TM4", "NC_003387"],
202=>[202, "Synechococcus cyanophage P60", "NC_003390"],
203=>[203, "Spiroplasma citri phi SpV4", "NC_003438"],
204=>[204, "Shigella flexneri phi V", "NC_003444"],
205=>[205, "Propionibacterium phi B5", "NC_003460"],
206=>[206, "Clostridium perfringens phi 3626", "NC_003524"],
207=>[207, "Escherichia coli phi Stx2", "NC_003525"],
208=>[208, "Leuconostoc oenos phi L5", "NC_003695"],
209=>[209, "Pseudomonas syringae phi 6S", "NC_003714"],
210=>[210, "Pseudomonas syringae phi 6L", "NC_003715"],
211=>[211, "Pseudomonas syringae phi 6M", "NC_003716"],
212=>[212, "Spiroplasma phi 1-C74", "NC_003793"],
213=>[213, "Vibrio phi VpV262", "NC_003907"],
214=>[214, "Lactococcus lactis phi ul36", "NC_004066"],
215=>[215, "Natrialba magadii phi Ch1", "NC_004084"],
216=>[216, "Sulfolobus islandicus rod-shaped virus 2", "NC_004086"],
217=>[217, "Sulfolobus islandicus rod-shaped virus 1", "NC_004087"],
218=>[218, "Lactobacillus casei phi A2", "NC_004112"],
219=>[219, "Bacillus subtilis phi B103", "NC_004165"],
220=>[220, "Bacillus subtilis phi SPP1", "NC_004166"],
221=>[221, "Bacillus subtilis phi 105", "NC_004167"],
222=>[222, "Pseudomonas syringae phi 13S", "NC_004170"],
223=>[223, "Pseudomonas syringae phi 13M", "NC_004171"],
224=>[224, "Pseudomonas syringae phi 13L", "NC_004172"],
225=>[225, "Pseudomonas syringae phi 12L", "NC_004173"],
226=>[226, "Pseudomonas syringae phi 12S", "NC_004174"],
227=>[227, "Pseudomonas syringae phi 12M", "NC_004175"],
228=>[228, "Escherichia coli phi SP", "NC_004301"],
229=>[229, "Lactococcus lactis phi r1t", "NC_004302"],
230=>[230, "Streptococcus thermophilus phi O1205", "NC_004303"],
231=>[231, "Lactobacillus phi G1e", "NC_004305"],
232=>[232, "Vibrio cholerae phi fs1", "NC_004306"],
233=>[233, "Salmonella typhimurium phi ST64B", "NC_004313"],
234=>[234, "Burkholderia cepacia phi Bcep781", "NC_004333"],
235=>[235, "Salmonella typhimurium phi ST64T", "NC_004348"],
236=>[236, "Vibrio harveyi phi VHML", "NC_004456"],
237=>[237, "Thermus aquaticus phi IN93", "NC_004462"],
238=>[238, "Pseudomonas aeruginosa phi PaP3", "NC_004466"],
239=>[239, "Streptococcus pyogenes phi 315.1 prophage", "NC_004584"],
240=>[240, "Streptococcus pyogenes phi 315.2 prophage", "NC_004585"],
241=>[241, "Streptococcus pyogenes phi 315.3 prophage", "NC_004586"],
242=>[242, "Streptococcus pyogenes phi 315.4 prophage", "NC_004587"],
243=>[243, "Streptococcus pyogenes phi 315.5 prophage", "NC_004588"],
244=>[244, "Streptococcus pyogenes phi 315.6 prophage", "NC_004589"],
245=>[245, "Staphylococcus aureus phi 11", "NC_004615"],
246=>[246, "Staphylococcus aureus phi 12", "NC_004616"],
247=>[247, "Staphylococcus aureus phi 13", "NC_004617"],
248=>[248, "Pseudomonas phi KZ", "NC_004629"],
249=>[249, "Streptomyces lividans phi BT1", "NC_004664"],
250=>[250, "Pseudomonas phi gh-1", "NC_004665"],
251=>[251, "Staphylococcus phi 44AHJD", "NC_004678"],
252=>[252, "Staphylococcus aureus phi P68", "NC_004679"],
253=>[253, "Mycobacterium phi Che8", "NC_004680"],
254=>[254, "Mycobacterium phi CJW1", "NC_004681"],
255=>[255, "Mycobacterium phi Bxz2", "NC_004682"],
256=>[256, "Mycobacterium phi Che9c", "NC_004683"],
257=>[257, "Mycobacterium phi Rosebush", "NC_004684"],
258=>[258, "Mycobacterium phi Corndog", "NC_004685"],
259=>[259, "Mycobacterium phi Che9d", "NC_004686"],
260=>[260, "Mycobacterium phi Bxz1", "NC_004687"],
261=>[261, "Mycobacterium phi Omega", "NC_004688"],
262=>[262, "Mycobacterium phi Barnyard", "NC_004689"],
263=>[263, "Rhodothermus marinus phi RM 378", "NC_004735"],
264=>[264, "Vibrio cholerae phi VGJphi", "NC_004736"],
265=>[265, "Staphylococcus aureus phi N315", "NC_004740"],
266=>[266, "Yersinia pestis phi L-413C", "NC_004745"],
267=>[267, "Lactococcus phi 4268; Lactococcus phi P335", "NC_004746"],
268=>[268, "Salmonella phi epsilon15", "NC_004775"],
269=>[269, "Yersinia pestis phi A1122", "NC_004777"],
270=>[270, "Escherichia coli phi 4795", "NC_004813"],
271=>[271, "Streptococcus phi C1", "NC_004814"],
272=>[272, "Bacillus cereus phi phBC6A51", "NC_004820"],
273=>[273, "Bacillus cereus phi phBC6A52", "NC_004821"],
274=>[274, "Actinobacillus actinomycetemcomitans phi Aaphi 23", "NC_004827"],
275=>[275, "Enterobacteria phi SP6", "NC_004831"],
276=>[276, "Xanthomonas oryzae phi Xp10", "NC_004902"],
277=>[277, "Escherichia coli phi Stx1", "NC_004913"],
278=>[278, "Escherichia coli phi Stx2 II", "NC_004914"],
279=>[279, "Enterobacteria phi RB69", "NC_004928"],
280=>[280, "Streptococcus mitis phi SM1", "NC_004996"],
281=>[281, "Pseudomonas aeruginosa phi KMV", "NC_005045"],
282=>[282, "Escherichia coli phi W", "NC_005056"],
283=>[283, "Enterobacteria phi RB49", "NC_005066"],
284=>[284, "Yersinia enterocolitica phi PY54", "NC_005069"],
285=>[285, "Vibrio parahaemolyticus phi KVP40", "NC_005083"],
286=>[286, "Burkholderia cepacia phi BcepNazgul", "NC_005091"],
287=>[287, "Ralstonia phi p12J", "NC_005131"],
288=>[288, "Aeromonas salmonicida phi 44RR2.8t", "NC_005135"],
289=>[289, "Pseudomonas aeruginosa phi D3112", "NC_005178"],
290=>[290, "Bacillus thuringiensis phi Bam35c", "NC_005258"],
291=>[291, "Mycobacterium phi PG1", "NC_005259"],
292=>[292, "Aeromonas hydrophila phi Aeh1", "NC_005260"],
293=>[293, "Burkholderia cepacia phi Bcep22", "NC_005262"],
294=>[294, "Burkholderia cenocepacia phi Bcep1", "NC_005263"],
295=>[295, "Sulfolobus spindle-shaped virus 2", "NC_005265"],
296=>[296, "Salmonella phi Felix 01", "NC_005282"],
297=>[297, "Burkholderia pseudomallei phi 1026b", "NC_005284"],
298=>[298, "Streptococcus pneumoniae phi EJ-1", "NC_005294"],
299=>[299, "Salmonella phi PSP3", "NC_005340"],
300=>[300, "Burkholderia cepacia phi Bcep43", "NC_005342"],
301=>[301, "Enterobacteria phi Sf6", "NC_005344"],
302=>[302, "Streptomyces venezuelae phi VWB", "NC_005345"],
303=>[303, "Lactobacillus johnsonii prophage Lj928", "NC_005354"],
304=>[304, "Lactobacillus johnsonii prophage Lj965", "NC_005355"],
305=>[305, "Staphylococcus aureus phi 77", "NC_005356"],
306=>[306, "Bordetella phi BPP-1", "NC_005357"],
307=>[307, "Sulfolobus spindle-shaped virus Ragged Hills", "NC_005360"],
308=>[308, "Sulfolobus spindle-shaped virus Kamchatka-1", "NC_005361"],
309=>[309, "Bordetella phi BMP-1", "NC_005808"],
310=>[310, "Bordetella phi BIP-1", "NC_005809"],
311=>[311, "Lactococcus lactis phi LC3", "NC_005822"],
312=>[312, "Acidianus filamentus virus 1", "NC_005830"],
313=>[313, "Enterobacteria phi T1", "NC_005833"],
314=>[314, "Salmonella typhimurium phi ST104", "NC_005841"],
315=>[315, "Escherichia coli phi P1", "NC_005856"],
316=>[316, "Klebsiella oxytoca phi KO2", "NC_005857"],
317=>[317, "Enterobacteria phi T5", "NC_005859"],
318=>[318, "Vibrio phi VP2", "NC_005879"],
319=>[319, "Staphylococcus phi K", "NC_005880"],
320=>[320, "Burkholderia cenocepacia phi BcepMu", "NC_005882"],
321=>[321, "Pseudomonas aeruginosa phi PaP2", "NC_005884"],
322=>[322, "Actinoplanes phi Asp2", "NC_005885"],
323=>[323, "Burkholderia cenocepacia phi BcepB1A", "NC_005886"],
324=>[324, "Burkholderia cepacia complex phi BcepC6B", "NC_005887"],
325=>[325, "Vibrio phi VP5", "NC_005891"],
326=>[326, "Sulfolobus turreted icosahedral virus", "NC_005892"],
327=>[327, "Lactobacillus casei phi AT3", "NC_005893"],
328=>[328, "Vibrio parahaemolyticus phi Vf33", "NC_005948"],
329=>[329, "Vibrio parahaemolyticus phi Vf12", "NC_005949"],
330=>[330, "Mycoplasma fermentans phi MFV1", "NC_005964"],
331=>[331, "Sulfolobus tengchongensis spindle-shaped virus STSV1", "NC_006268"],
332=>[332, "Vibrio cholerae phi KSF-1", "NC_006294"],
333=>[333, "Flavobacterium phi 11b", "NC_006356"],
334=>[334, "Pseudomonas aeruginosa phi B3", "NC_006548"],
335=>[335, "Pseudomonas aeruginosa phi F116", "NC_006552"],
336=>[336, "Bacillus clarkii phi BCJA1c", "NC_006557"],
337=>[337, "Lactobacillus plantarum phi LP65", "NC_006565"],
338=>[338, "Synechococcus phi S-PM2", "NC_006820"],
339=>[339, "Prochlorococcus marinus phi P-SSP7", "NC_006882"],
340=>[340, "Prochlorococcus marinus phi P-SSM2", "NC_006883"],
341=>[341, "Prochlorococcus marinus phi P-SSM4", "NC_006884"],
342=>[342, "Lactobacillus plantarum phi JL-1", "NC_006936"],
343=>[343, "alpha-proteobacterium phi JL001", "NC_006938"],
344=>[344, "Salmonella typhimurium phi KS7", "NC_006940"],
345=>[345, "Bacillus thuringiensis phi GIL16c", "NC_006945"],
346=>[346, "Salmonella typhimurium phi ES18", "NC_006949"],
347=>[347, "Listonella pelagia phi HSIC", "NC_006953"],
348=>[348, "Enterobacteria phage ID11", "NC_006954"],
349=>[349, "Streptococcus thermophilus phi 2972", "NC_007019"],
350=>[350, "Staphylococcus phi Twort", "NC_007021"],
351=>[351, "Aeromonas phi 31", "NC_007022"],
352=>[352, "Enterobacteria phi RB43", "NC_007023"],
353=>[353, "Xanthomonas campestris phi Xp15", "NC_007024"],
354=>[354, "Staphylococcus aureus phi PT1028", "NC_007045"],
355=>[355, "Staphylococcus aureus phi 66", "NC_007046"],
356=>[356, "Staphylococcus aureus phi 187", "NC_007047"],
357=>[357, "Staphylococcus aureus phi 69", "NC_007048"],
358=>[358, "Staphylococcus aureus phi 53", "NC_007049"],
359=>[359, "Staphylococcus aureus phi 85", "NC_007050"],
360=>[360, "Staphylococcus aureus phi 2638A", "NC_007051"],
361=>[361, "Staphylococcus aureus phi 42e", "NC_007052"],
362=>[362, "Staphylococcus aureus phi 3A", "NC_007053"],
363=>[363, "Staphylococcus aureus phi 47", "NC_007054"],
364=>[364, "Staphylococcus aureus phi 37", "NC_007055"],
365=>[365, "Staphylococcus aureus phi EW", "NC_007056"],
366=>[366, "Staphylococcus aureus phi 96", "NC_007057"],
367=>[367, "Staphylococcus aureus phi ROSA", "NC_007058"],
368=>[368, "Staphylococcus aureus phi 71", "NC_007059"],
369=>[369, "Staphylococcus aureus phi 55", "NC_007060"],
370=>[370, "Staphylococcus aureus phi 29", "NC_007061"],
371=>[371, "Staphylococcus aureus phi 52A", "NC_007062"],
372=>[372, "Staphylococcus aureus phi 88", "NC_007063"],
373=>[373, "Staphylococcus aureus phi 92", "NC_007064"],
374=>[374, "Staphylococcus aureus phi X2", "NC_007065"],
375=>[375, "Staphylococcus aureus phi G1", "NC_007066"],
376=>[376, "Burkholderia pseudomallei phi 52237", "NC_007145"],
377=>[377, "Vibrio phi VP4", "NC_007149"],
378=>[378, "Stenotrophomonas phi SMA9", "NC_007189"],
379=>[379, "Haloarcula hispanica phi SH1", "NC_007217"],
380=>[380, "Escherichia coli phi JK06", "NC_007291"],
381=>[381, "Escherichia coli phi L17", "NC_007449"],
382=>[382, "Enterobacteria phi PR3", "NC_007450"],
383=>[383, "Enterobacteria phi PR4", "NC_007451"],
384=>[384, "Enterobacteria phi PR5", "NC_007452"],
385=>[385, "Enterobacteria phi PR772", "NC_007453"],
386=>[386, "Enterobacteria phi K1F", "NC_007456"],
387=>[387, "Bacillus anthracis phi Cherry", "NC_007457"],
388=>[388, "Bacillus anthracis phi Gamma", "NC_007458"],
389=>[389, "Chlamydia phi 4", "NC_007461"],
390=>[390, "Burkholderia cepacia phi Bcep176", "NC_007497"],
391=>[391, "Lactobacillus rhamnosus phi Lc-Nu", "NC_007501"],
392=>[392, "Chlamydia phi 3", "NC_008355"],
393=>[393, "Neisseria meningitidis phi NeisMu1 prophage", "NC_003112"],
394=>[394, "Neisseria meningitidis phi NeisMu2 prophage", "NC_003112"],
395=>[395, "Bacillus subtilis phi PBSX prophage", "NC_000964"],
396=>[396, "Pseudomonas putida phi PP01 prophage", "NC_002947"],
397=>[397, "Pseudomonas putida phi PP02 prophage", "NC_002947"],
398=>[398, "Pseudomonas putida phi PP03 prophage", "NC_002947"],
399=>[399, "Pseudomonas putida phi PP04 prophage", "NC_002947"],
400=>[400, "Pasturella multocida phi Past1 prophage", "NC_002663"],
401=>[401, "Neisseria meningitidis phi Pnm1 prophage", "NC_003116"],
402=>[402, "Neisseria meningitidis phi Pnm2 prophage", "NC_003116"],
403=>[403, "Neisseria meningitidis phi Pnm3 prophage", "NC_003116"],
404=>[404, "Pseudomonas aeruginosa phi PyocinF prophage", "NC_002516"],
405=>[405, "Pseudomonas aeruginosa phi PyocinR prophage", "NC_002516"],
406=>[406, "Escherichia coli phi QIN prophage", "NC_000913"],
407=>[407, "Ralstonia solanacearum phi RS1 prophage", "NC_003295"],
408=>[408, "Ralstonia solanacearum phi RS2 prophage", "NC_003295"],
409=>[409, "Ralstonia solanacearum phi RS3 prophage", "NC_003295"],
410=>[410, "Ralstonia solanacearum phi RS4 prophage", "NC_003295"],
411=>[411, "Ralstonia solanacearum phi RS5 prophage", "NC_003295"],
412=>[412, "Ralstonia solanacearum phi RS6 prophage", "NC_003295"],
413=>[413, "Ralstonia solanacearum phi RS7 prophage", "NC_003295"],
414=>[414, "Ralstonia solanacearum phi RS8 prophage", "NC_003295"],
415=>[415, "Escherichia coli phi Rac prophage", "NC_000913"],
416=>[416, "Deinococcus radiodurans phi RadMu prophage", "NC_001264"],
417=>[417, "Mycobacterium tuberculosis phi Rv1 prophage", "NC_000962"],
418=>[418, "Mycobacterium tuberculosis phi Rv2 prophage", "NC_000962"],
419=>[419, "Bacillus subtilis phi SKIN prophage", "NC_000964"],
420=>[420, "Staphylococcus aureus phi Sa2mw prophage", "NC_003923"],
421=>[421, "Staphylococcus aureus phi Sa3mw prophage", "NC_003923"],
422=>[422, "Escherichia coli phi Sp1 prophage", "NC_002695"],
423=>[423, "Escherichia coli phi Sp10 prophage", "NC_002695"],
424=>[424, "Escherichia coli phi Sp11 prophage", "NC_002695"],
425=>[425, "Escherichia coli phi Sp12 prophage", "NC_002695"],
426=>[426, "Escherichia coli phi Sp13 prophage", "NC_002695"],
427=>[427, "Escherichia coli phi Sp14 prophage", "NC_002695"],
428=>[428, "Escherichia coli phi Sp15 prophage", "NC_002695"],
429=>[429, "Escherichia coli phi Sp16 prophage", "NC_002695"],
430=>[430, "Escherichia coli phi Sp17 prophage", "NC_002695"],
431=>[431, "Escherichia coli phi Sp18 prophage", "NC_002695"],
432=>[432, "Escherichia coli phi Sp2 prophage", "NC_002695"],
433=>[433, "Escherichia coli phi Sp3 prophage", "NC_002695"],
434=>[434, "Escherichia coli phi Sp4 prophage", "NC_002695"],
435=>[435, "Escherichia coli phi Sp5 prophage", "NC_002695"],
436=>[436, "Escherichia coli phi Sp6 prophage", "NC_002695"],
437=>[437, "Escherichia coli phi Sp7 prophage", "NC_002695"],
438=>[438, "Escherichia coli phi Sp8 prophage", "NC_002695"],
439=>[439, "Escherichia coli phi Sp9 prophage", "NC_002695"],
440=>[440, "Bacillus subtilis phi Spbeta prophage", "NC_000964"],
441=>[441, "Bacillus subtilis phi Spgamma prophage", "NC_000964"],
442=>[442, "Streptomyces coelicolor phi Stc1 prophage", "NC_003888"],
443=>[443, "Salmonella Typhi Sti1 prophage", "NC_003198"],
444=>[444, "Salmonella Typhi Sti10 prophage", "NC_003198"],
445=>[445, "Salmonella Typhi Sti11 prophage", "NC_003385"],
446=>[446, "Salmonella Typhi Sti2 prophage", "NC_003198"],
447=>[447, "Salmonella Typhi Sti3 prophage", "NC_003198"],
448=>[448, "Salmonella Typhi Sti4b prophage", "NC_003198"],
449=>[449, "Salmonella Typhi Sti5 prophage", "NC_003198"],
450=>[450, "Salmonella Typhi Sti6 prophage", "NC_003198"],
451=>[451, "Salmonella Typhi Sti7 prophage", "NC_003198"],
452=>[452, "Salmonella Typhi Sti8 prophage", "NC_003198"],
453=>[453, "Salmonella Typhi Sti9 prophage", "NC_003198"],
454=>[454, "Salmonella typhimurium phi Stm6 prophage", "NC_003197"],
455=>[455, "Salmonella typhimurium phi Stm7 prophage", "NC_003197"],
456=>[456, "Agrobacterium tumefaciens phi Tum1 prophage", "NC_003062"],
457=>[457, "Agrobacterium tumefaciens phi Tum2 prophage", "NC_003062"],
458=>[458, "Vibrio cholerae phi VibMu prophage", "NC_002505"],
459=>[459, "Xanthomonas axonopodis phi XacP1 prophage", "NC_003919"],
460=>[460, "Xanthomonas axonopodis phi XacP2 prophage", "NC_003919"],
461=>[461, "Xanthomonas campestris phi XccP1 prophage", "NC_003902"],
462=>[462, "Xylella fastidiosa phi XfP1 prophage", "NC_002488"],
463=>[463, "Xylella fastidiosa phi XfP10 prophage", "NC_002488"],
464=>[464, "Xylella fastidiosa phi XfP2 prophage", "NC_002488"],
465=>[465, "Xylella fastidiosa phi XfP3 prophage", "NC_002488"],
466=>[466, "Xylella fastidiosa phi XfP4 prophage", "NC_002488"],
467=>[467, "Xylella fastidiosa phi XfP5 prophage", "NC_002488"],
468=>[468, "Xylella fastidiosa phi XfP6 prophage", "NC_002488"],
469=>[469, "Xylella fastidiosa phi XfP7 prophage", "NC_002488"],
470=>[470, "Xylella fastidiosa phi XfP8 prophage", "NC_002488"],
471=>[471, "Xylella fastidiosa phi XfP9 prophage", "NC_002488"],
472=>[472, "Xylella fastidiosa phi Xpd1 prophage", "NC_004556"],
473=>[473, "Xylella fastidiosa phi Xpd2 prophage", "NC_004556"],
474=>[474, "Xylella fastidiosa phi Xpd3 prophage", "NC_004556"],
475=>[475, "Xylella fastidiosa phi Xpd4 prophage", "NC_004556"],
476=>[476, "Xylella fastidiosa phi Xpd5 prophage", "NC_004556"],
477=>[477, "Xylella fastidiosa phi Xpd6 prophage", "NC_004556"],
478=>[478, "Xylella fastidiosa phi Xpd7 prophage", "NC_004556"],
479=>[479, "Xylella fastidiosa phi Xpd8 prophage", "NC_004556"],
480=>[480, "Yersinia pestis phi YP1 prophage", "NC_003143"],
481=>[481, "Yersinia pestis phi YP2 prophage", "NC_003143"],
482=>[482, "Yersinia pestis phi YP3 prophage", "NC_003143"],
483=>[483, "Yersinia pestis phi YP4 prophage", "NC_003143"],
484=>[484, "Yersinia pestis phi YP5 prophage", "NC_003143"],
485=>[485, "Yersinia pestis phi YP6 prophage", "NC_003143"],
486=>[486, "Yersinia pestis phi YP7 prophage", "NC_003143"],
487=>[487, "Yersinia pestis phi YP8 prophage", "NC_003134"],
488=>[488, "Yersinia pestis phi Yers1 prophage", "NC_004088"],
489=>[489, "Yersinia pestis phi Yers2 prophage", "NC_004088"],
490=>[490, "Yersinia pestis phi Yers3 prophage", "NC_004088"],
491=>[491, "Yersinia pestis phi Yers4 prophage", "NC_004088"],
492=>[492, "Yersinia pestis phi Yers5 prophage", "NC_004088"],
493=>[493, "Borrelia burgdorferi phi cp-9 prophage", "NC_001904"],
494=>[494, "Borrelia burgdorferi phi cp32-1 prophage", "NC_000948"],
495=>[495, "Borrelia burgdorferi phi cp32-3 prophage", "NC_000949"],
496=>[496, "Borrelia burgdorferi phi cp32-4 prophage", "NC_000950"],
497=>[497, "Borrelia burgdorferi phi cp32-6 prophage", "NC_000951"],
498=>[498, "Borrelia burgdorferi phi cp32-7 prophage", "NC_000952"],
499=>[499, "Borrelia burgdorferi phi cp32-8 prophage", "NC_000953"],
500=>[500, "Borrelia burgdorferi phi cp32-9 prophage", "NC_000954"],
501=>[501, "Escherichia coli phi e14 prophage", "NC_000913"],
502=>[502, "Borrelia burgdorferi lp28-2 prophage", "AE000786"],
503=>[503, "Borrelia burgdorferi lp54 prophage", "NC_001857"],
504=>[504, "Borrelia burgdorferi lp56 prophage", "NC_000956"],
505=>[505, "Streptococcus pyogenes phi sda prophage", "NC_003485"],
506=>[506, "Streptococcus pyogenes phi speA prophage", "NC_003485"],
507=>[507, "Streptococcus pyogenes phi speC prophage", "NC_003485"],
508=>[508, "Streptococcus pyogenes phi speL_M prophage", "NC_003485"],
509=>[509, "Vibrio parahaemolyticus phi VP16T", "AY328852"],
510=>[510, "Vibrio parahaemolyticus phi VP16C", "AY328853"],
};
return $genome;
}






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