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Mon Feb 19 17:15:26 2007 UTC (13 years ago) by olson
Branch: x, MAIN
CVS Tags: mgrast_dev_08112011, mgrast_dev_08022011, mgrast_dev_05262011, mgrast_dev_04082011, mgrast_version_3_2, mgrast_dev_12152011, mgrast_dev_06072011, mgrast_rel_2008_0806, mgrast_dev_10262011, mgrast_dev_02212011, mgrast_rel_2008_0923, mgrast_release_3_0, mgrast_dev_03252011, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, mgrast_dev_04012011, mgrast_rel_2008_0919, mgrast_rel_2008_1110, myrast_33, mgrast_rel_2008_0917, mgrast_dev_04052011, mgrast_dev_02222011, y, HEAD
Changes since 1.1: +0 -0 lines
Initial import

#!/usr/bin/perl -w

# get some sequences from a fasta file

use strict;
my $inf=shift || die "file of sequences we need?";
open(IN, $inf) || die "Can't open $inf";
my %need;
while (<IN>) {chomp; $need{$_}=1}
close IN;

my $fa=shift || die "fasta file?";
open(IN, $fa) || die "Can't iope  $fa";
my $print;
while (<IN>) {
 if (/^>(\S+)/) { 
  my $t=$1;
  if ($need{$t}) {$print = 1}
  else {undef $print}
 print if ($print);

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