[Bio] / FigMetagenomeTools / gbk2fastadnaonly.pl Repository:
ViewVC logotype

View of /FigMetagenomeTools/gbk2fastadnaonly.pl

Parent Directory Parent Directory | Revision Log Revision Log


Revision 1.1.1.1 - (download) (as text) (annotate) (vendor branch)
Mon Feb 19 17:15:26 2007 UTC (12 years, 9 months ago) by olson
Branch: x, MAIN
CVS Tags: mgrast_dev_08112011, mgrast_dev_08022011, mgrast_dev_05262011, mgrast_dev_04082011, mgrast_version_3_2, mgrast_dev_12152011, mgrast_dev_06072011, mgrast_rel_2008_0806, mgrast_dev_10262011, mgrast_dev_02212011, mgrast_rel_2008_0923, mgrast_release_3_0, mgrast_dev_03252011, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, mgrast_dev_04012011, mgrast_rel_2008_0919, mgrast_rel_2008_1110, myrast_33, mgrast_rel_2008_0917, mgrast_dev_04052011, mgrast_dev_02222011, y, HEAD
Changes since 1.1: +0 -0 lines
Initial import

#!/usr/bin/perl -w

use strict;
foreach my $file (@ARGV) {
 open (IN, $file) || die "Can't open $file";
 my $get=0; my $tag=0;
 while (<IN>) {
  if (/VERSION\s+(\S+)/) {print ">$1\n"; $tag=1}
  if (/ORIGIN/) {die "couldn't find tag" unless ($tag); $get=1; next}
  if (m#//#) {$get=0; $tag=0}
  if ($get == 1) {
   s/\d+//g; s/\s+//g;
   print uc($_), "\n";
  }
 }
  
}


MCS Webmaster
ViewVC Help
Powered by ViewVC 1.0.3