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Revision 1.1.1.1 - (download) (as text) (annotate) (vendor branch)
Mon Feb 19 17:15:26 2007 UTC (12 years, 9 months ago) by olson
Branch: x, MAIN
CVS Tags: mgrast_dev_08112011, mgrast_dev_08022011, mgrast_dev_05262011, mgrast_dev_04082011, mgrast_version_3_2, mgrast_dev_12152011, mgrast_dev_06072011, mgrast_rel_2008_0806, mgrast_dev_10262011, mgrast_dev_02212011, mgrast_rel_2008_0923, mgrast_release_3_0, mgrast_dev_03252011, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, mgrast_dev_04012011, mgrast_rel_2008_0919, mgrast_rel_2008_1110, myrast_33, mgrast_rel_2008_0917, mgrast_dev_04052011, mgrast_dev_02222011, y, HEAD
Changes since 1.1: +0 -0 lines
Initial import

#!/usr/bin/perl -w

# count some data for mya

use strict;
use DBI;
use Bio::SearchIO;

my ($filecount, $querycount, $humanfirst, $hitcount)=(0,0,0,0);
my ($colifirst, $ratfirst, $mousefirst)=(0,0,0);
my %mitochon=&mito();
my %m13=&m13();
my %nohits=&nohits();
my @unknowns;
my %unknown;

my $dbh=DBI->connect("DBI:mysql:ncbi", "rob", "forestry") or die "Can't connect to database\n";
my $dir=shift || die "dir?";
opendir(DIR, $dir) || die "Can't opebn $dir";
while (my $file=readdir(DIR)) {
 next if ($file =~ /^\./);
 $filecount++;
 unless ($filecount % 50) {print STDERR "$filecount files in ", time-$^T, " seconds total\n"}
 next if ($m13{$file} || $nohits{$file} || $mitochon{$file});
 my $sio=Bio::SearchIO->new(-file=>"$dir/$file", -format=>"blast");
 while (my $res=$sio->next_result) {
  my $query=$res->query_name;
  my $len=$res->query_length;
  my $first=1;
  $querycount++;
  my $hit=$res->next_hit;
  unless ($hit) {
   print STDERR "No hit for $file\n";
   $unknown{$file}="No hit?";
   next;
  }
  $hitcount++;
  my $hitname=$hit->name;
  my $hitdesc=$hit->description;
  my $ah = $hitname . " " . $hitdesc;
   
  if ($ah =~ /human/i || $ah =~ /homo/i) {$humanfirst++}
  elsif ($ah =~ /Mus musculus/i || $ah =~ /mouse/) {$mousefirst++}
  elsif ($ah =~ /\brat/i) {$ratfirst++}
  elsif ($ah =~ /coli/) {$colifirst++}
  else {
    $unknown{$file}=$ah;
    # we don't know what the first hit is
    $hitname =~ /\w+\|(\S+?)\|/;
    my $acc=$1;
    # now we have to iterate through what we know and see if it is in the databases. Yuck
    $acc =~ s/\.\d+$//;
    my @res=$dbh->selectrow_array("select GI from GbAccList where genbank = '$acc'");
    my $keep=1;
    if ($res[0]) {
     my $gi=$res[0];
     undef @res;
     @res=$dbh->selectrow_array("select tax_id from gi_taxid_nucl where gi = $gi");
     if ($res[0]) {
      my $tid=$res[0];
      undef @res;
      @res=$dbh->selectrow_array("select division from nodes where tax_id=$tid");
      if ($res[0]) {
       my $div=$res[0];
       undef @res;
       @res=$dbh->selectrow_array("select division_name from division where division_id=$div");
       $unknown{$file}=$res[0];
       print STDERR "\tFound $res[0] for that\n";
      }
     }
    }
   }
 }
}

print "there were $filecount files\nthere were $querycount queries\nthere were ", scalar(keys %nohits), " no hits\n";
print "there were $hitcount hits\n";
print "there were ", scalar(keys %m13), " sequences with m13 in it\n";
print "there were $mousefirst hits with mouse as the first hit\nThere were $ratfirst hits with rat as the first hit.\n";
print "There were $colifirst with coli as the first hit\n$humanfirst hits were human in the TOP hit\n";
print scalar(keys %mitochon), " sequences had mitochondria\n";

my %division;
foreach my $k (keys %unknown) {
 $division{$unknown{$k}}++;
}

print "\n\nThese are the divisions for everything else:\n";
print map {"$_\t$division{$_}\n"} sort {$division{$b} <=> $division{$a}} keys %division;


print STDERR "Couting data took ", time-$^T, " seconds\n";







sub mito {
 my %mito=(
"SDSU1_BLDSSA_002_D07.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_G12.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_H07.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_A07.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_B11.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_C11.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_E01.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_H02.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_H08.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_A01.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_B12.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_C01.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_A10.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_B02.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_C05.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_D10.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_E07.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_F06.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_H04.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_H05.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_H06.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_B10.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_C01.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_E03.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_F04.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_A06.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_B04.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_C03.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_F10.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_H06.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_D01.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_D03.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_E02.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_E04.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_F01.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_F11.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_G08.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_H02.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_C10.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_C12.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_E04.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_F07.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_H07.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_A06.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_B04.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_C12.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_A06.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_C06.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_D07.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_E04.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_E10.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_F08.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_H06.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_A02.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_A10.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_C03.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_C12.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_G12.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_A03.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_B11.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_C05.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_E03.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_G11.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_H12.x01.phd.1" => 1,
);
return %mito;
}



sub m13 { 
 my %m13=(
"SDSU1_BLDSSA_002_B01.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_B02.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_B06.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_B07.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_B09.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_B12.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_C03.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_C06.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_C09.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_C10.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_C12.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_D02.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_D04.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_D05.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_D07.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_D09.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_D11.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_D12.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_E06.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_E07.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_E10.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_F03.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_F04.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_F05.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_F08.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_F09.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_F11.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_G04.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_G06.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_G08.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_G11.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_H02.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_A05.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_A07.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_A12.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_B01.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_B03.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_B04.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_B05.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_B06.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_B08.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_B10.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_B11.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_C04.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_C05.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_C09.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_C11.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_C12.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_D04.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_D07.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_D10.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_E01.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_E03.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_E06.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_E08.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_E12.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_F01.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_G01.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_G04.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_G07.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_G09.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_H02.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_H03.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_H05.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_A09.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_A10.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_B02.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_B03.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_B04.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_B07.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_B09.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_B11.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_B12.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_C01.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_C02.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_C06.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_C07.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_C08.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_C10.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_D01.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_D07.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_D08.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_D11.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_D12.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_E06.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_E09.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_E11.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_E12.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_F04.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_G01.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_H03.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_H08.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_H09.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_A01.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_A02.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_A03.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_A10.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_B06.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_B11.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_B12.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_C01.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_C05.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_E02.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_E03.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_E05.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_E08.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_E10.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_F05.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_F11.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_G04.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_G06.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_G08.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_H02.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_H04.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_H06.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_H07.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_H10.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_A07.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_A11.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_A12.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_B06.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_B10.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_B11.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_C02.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_C05.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_C07.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_C10.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_D03.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_D09.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_D11.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_E06.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_E08.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_E10.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_F04.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_F06.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_G08.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_G09.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_G12.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_H03.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_H05.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_H11.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_A03.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_A05.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_A06.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_A07.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_A12.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_B01.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_B07.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_B09.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_C02.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_C03.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_C09.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_C12.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_D03.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_D04.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_D08.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_D11.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_E04.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_E05.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_E07.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_E08.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_E11.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_F09.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_F10.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_G02.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_G05.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_G08.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_H03.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_H05.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_A03.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_A04.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_B05.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_B07.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_C01.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_C09.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_C10.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_D04.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_D05.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_D06.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_D08.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_D09.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_D12.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_E02.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_E04.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_E07.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_E08.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_E10.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_G08.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_H02.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_H08.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_A05.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_A07.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_A12.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_B01.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_B04.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_B07.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_B08.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_B10.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_C01.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_C03.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_C04.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_C09.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_C10.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_D01.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_D03.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_D05.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_D07.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_D08.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_D10.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_D12.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_E01.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_E02.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_E09.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_F03.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_F07.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_F11.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_G03.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_G04.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_G07.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_G09.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_H04.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_H06.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_H07.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_H12.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_A05.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_A06.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_A07.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_B04.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_B05.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_B06.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_B11.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_B12.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_C10.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_D04.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_E06.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_E08.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_F10.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_H06.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_H10.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_A01.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_A05.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_A09.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_B03.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_B07.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_B08.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_C01.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_C08.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_C09.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_C12.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_D05.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_D06.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_E04.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_E06.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_E10.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_F03.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_F05.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_F06.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_G05.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_G09.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_H01.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_H03.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_H05.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_H06.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_H10.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_A03.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_A04.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_A06.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_A09.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_A10.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_A11.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_B10.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_B11.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_B12.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_C08.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_C09.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_C11.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_C12.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_D01.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_D03.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_D07.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_D10.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_E12.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_F10.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_H01.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_H02.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_H05.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_A02.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_A09.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_A11.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_B01.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_B02.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_B04.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_B09.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_B10.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_B11.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_C05.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_C06.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_C07.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_C09.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_D03.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_D06.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_D08.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_D11.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_E01.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_E10.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_F01.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_F04.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_F05.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_G02.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_G03.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_G06.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_G09.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_G11.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_H02.x01.phd.1" => 1,
);
return %m13;
}

sub nohits {
 my %nohits=(
"SDSU1_BLDSSA_002_A06.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_A07.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_B03.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_B05.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_B08.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_C01.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_D01.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_E02.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_E04.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_H12.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_A01.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_C02.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_C08.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_D08.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_D12.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_G05.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_G08.x01.phd.1" => 1,
"SDSU1_BLDSSA_003_H12.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_A02.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_A04.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_A12.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_B01.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_B06.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_D03.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_E03.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_E05.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_G09.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_H10.x01.phd.1" => 1,
"SDSU1_BLDSSA_004_H12.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_A11.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_B01.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_D03.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_D11.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_E04.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_E06.x01.phd.1" => 1,
"SDSU1_BLDSSA_005_G09.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_A03.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_B03.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_D08.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_E01.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_F01.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_F03.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_F09.x01.phd.1" => 1,
"SDSU1_BLDSSA_006_H04.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_A11.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_C01.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_C05.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_E01.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_F07.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_G10.x01.phd.1" => 1,
"SDSU1_BLDSSA_007_H09.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_B02.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_C07.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_E03.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_F09.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_G07.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_H04.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_H06.x01.phd.1" => 1,
"SDSU1_BLDSSA_008_H11.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_A02.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_A08.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_A09.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_C02.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_C05.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_C06.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_D06.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_F09.x01.phd.1" => 1,
"SDSU1_BLDSSA_009_H09.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_A01.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_A08.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_A11.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_A12.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_B08.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_D05.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_D06.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_D11.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_G03.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_H01.x01.phd.1" => 1,
"SDSU1_BLDSSA_010_H08.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_C07.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_D09.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_D12.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_E01.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_E05.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_E11.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_G02.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_G08.x01.phd.1" => 1,
"SDSU1_BLDSSA_011_G11.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_A01.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_A07.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_B04.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_B09.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_D04.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_G09.x01.phd.1" => 1,
"SDSU1_BLDSSA_012_H04.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_A08.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_A10.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_C03.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_C04.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_C11.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_D05.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_H01.x01.phd.1" => 1,
"SDSU1_BLDSSA_013_H09.x01.phd.1" => 1,
"SDSU1_BLDSSA_002_E12.x01.phd.1" => 2,
"SDSU1_BLDSSA_006_E07.x01.phd.1" => 2,
);
return %nohits;
}

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