[Bio] / FigKernelScripts / update_taxonomies.pl Repository:
ViewVC logotype

Log of /FigKernelScripts/update_taxonomies.pl

Parent Directory Parent Directory


Links to HEAD: (view) (download) (as text) (annotate)
Sticky Tag:

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jan 13 20:59:56 2017 UTC (2 years, 10 months ago) by olson
Branch: MAIN
CVS Tags: HEAD
Changes since 1.8: +129 -61 lines
Diff to previous 1.8
Revamp of this script to use efetch utility instead of parsing webpage and to
take a list of genome IDs to update in the current seed, along with an optional
file of taxonomy overrides.

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 25 21:03:45 2006 UTC (13 years ago) by overbeek
Branch: MAIN
CVS Tags: mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_2008_0924, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912, rast_release_2008_09_29
Changes since 1.7: +1 -1 lines
Diff to previous 1.7
set longer gap between accessing NCBI

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 5 18:56:38 2005 UTC (13 years, 11 months ago) by olson
Branch: MAIN
CVS Tags: caBIG-05Apr06-00, caBIG-13Feb06-00
Changes since 1.6: +17 -0 lines
Diff to previous 1.6
Add license words.

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Mar 18 23:18:31 2004 UTC (15 years, 8 months ago) by overbeek
Branch: MAIN
CVS Tags: Root-bobdev_news, caBIG-00-00-00, caBIG-dataload-0, efrank-preMakefileToStandardMk, merge-bobdev_news-1, merge-bobdev_news-2, merge-bodev_news-3, merge-trunktag-bobdev_news-1, merge-trunktag-bobdev_news-2, merge-trunktag-bodev_news-3
Branch point for: Branch-bobdev_news
Changes since 1.5: +4 -8 lines
Diff to previous 1.5
Converted from "wget" to "curl"

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jan 28 16:52:33 2004 UTC (15 years, 9 months ago) by overbeek
Branch: MAIN
Changes since 1.4: +1 -1 lines
Diff to previous 1.4
make update_taxonomies process genomes in order

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jan 28 16:48:12 2004 UTC (15 years, 9 months ago) by overbeek
Branch: MAIN
Changes since 1.3: +1 -1 lines
Diff to previous 1.3
make update_taxonomies a bit less upsetting to NCBI

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jan 28 16:42:17 2004 UTC (15 years, 9 months ago) by overbeek
Branch: MAIN
Changes since 1.2: +14 -2 lines
Diff to previous 1.2
make update_taxonomies a bit less upsetting to NCBI

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jan 28 16:31:07 2004 UTC (15 years, 9 months ago) by overbeek
Branch: MAIN
Changes since 1.1: +1 -0 lines
Diff to previous 1.1
chmod taxonomies on update_taxonomies

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 1 20:46:40 2003 UTC (15 years, 11 months ago) by efrank
Branch: MAIN
CVS Tags: V00-00-00, V00-00-01, delong-01, delong-02

Makefile:
	get it to work with the release tools

All the rest:
	had to rename foo to foo.pl so that makefiles could recognize
	perl source from, say, Makefiles and READMEs

This form allows you to request diffs between any two revisions of this file. For each of the two "sides" of the diff, select a symbolic revision name using the selection box, or choose 'Use Text Field' and enter a numeric revision.

  Diffs between and
  Type of Diff should be a

Sort log by:

MCS Webmaster
ViewVC Help
Powered by ViewVC 1.0.3