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Revision 1.1 - (download) (as text) (annotate)
Mon Jun 25 21:33:51 2007 UTC (12 years, 4 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, myrast_rel40, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, rast_rel_2008_04_23, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
Update SEED caches.

#
# Update the global caches we keep to speed up common operations.
#

use FIG;
use FIG_Config;

my $fig = new FIG;

my $cache_dir = $fig->get_cache_directory();

update_subsystem_caches($fig, $cache_dir);

#update_genome_caches($fig, $cache_dir);

#
# Subsystem caches are in $cache_dir/subsys
#
# Files are
# 	all_subsystems
#		All subsys, one per line
# 	usable_subsystems
# 		All usable, one per line
#	subsystem_classification
#		2-col table of subsys and classification
#
sub update_subsystem_caches
{
    my($fig, $cache_dir) = @_;

    my $sc = "$cache_dir/subsys";
    &FIG::verify_dir($sc);

    open(ALL, ">$sc/all_subsystems");
    open(U, ">$sc/usable_subsystems");
    open(SC, ">$sc/subsystem_classification");
    for my $sub (sort $fig->all_subsystems)
    {
	print ALL "$sub\n";
	if ($fig->usable_subsystem($sub))
	{
	    print U "$sub\n";
	}
	my $c = $fig->subsystem_classification($sub);
	if ($c)
	{
	    print SC join("\t", $sub, @$c), "\n";
	}
    }
    close(ALL);
    close(U);
    close(SC);
}

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