[Bio] / FigKernelScripts / test_figfam_FF_peg.pl Repository:
ViewVC logotype

View of /FigKernelScripts/test_figfam_FF_peg.pl

Parent Directory Parent Directory | Revision Log Revision Log


Revision 1.3 - (download) (as text) (annotate)
Thu Apr 17 21:02:11 2008 UTC (11 years, 10 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, myrast_rel40, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, rast_rel_2008_04_23, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
Changes since 1.2: +1 -1 lines
Missed one of the figfamdata fixes.

use FIG;
my $fig = new FIG;

$usage = "usage: test_figfam_FF_peg FIGfam PEG [FigFamsData]";

(
 ($fam = shift @ARGV) &&
 ($peg = shift @ARGV)
)
    || die $usage;

$ff_data = (@ARGV > 0) ? $ARGV[0] : &FIG::get_figfams_data();
use FigFam;
$famO = new FigFam($fig,$fam,$ff_data);

$seq = $fig->get_translation($peg);
@x = $famO->should_be_member($seq,1);
print &Dumper(\@x);

MCS Webmaster
ViewVC Help
Powered by ViewVC 1.0.3