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Revision 1.1 - (download) (annotate)
Thu Nov 10 19:57:41 2005 UTC (14 years ago) by efrank
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, myrast_rel40, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, rast_rel_2008_04_23, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, caBIG-05Apr06-00, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, caBIG-00-00-00, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, caBIG-13Feb06-00, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
Basic regression test on CV stuff at FIG API level (which underlies CGI).

start
Test dropping an arg. Expect error:
Error for (1234, Some text, ):	add_cv_term: invalid arguments. All required, no empty strings
Test empty string user. Expect error:
Error for (ViaFigAPI, 1234, Some text):	add_cv_term: invalid arguments. All required, no empty strings
Test empty string peg. Expect error:
Error for (ViaFigAPI, 1234, Some text):	add_cv_term: invalid arguments. All required, no empty strings
Test empty string vocab. Expect error:
Error for (, 1234, Some text):	add_cv_term: invalid arguments. All required, no empty strings
Test empty string id. Expect error:
Error for (ViaFigAPI, , Some text):	add_cv_term: invalid arguments. All required, no empty strings
Test empty string term. Expect error:
Error for (ViaFigAPI, 1234,    ):	add_cv_term: invalid arguments. All required, no empty strings
Test add with extra spaces. Expect success:
User  master:EdF   added (  ViaFigAPICV1,  1234  ,  Some text)
Add again but 2nd vocab name to test multi-vocab, same term:
User  master:EdF   added (  ViaFigAPICV2,  1234  ,  Some text)
Find term just added via find_by_attribute:
	 Found fig|9606.3.peg.26823, ViaFigAPICV1, 1234; Some text
	 Found fig|9606.3.peg.26823, ViaFigAPICV2, 1234; Some text

Find term just added via search_index_by_attribute:
	 Found fig|9606.3.peg.26823, Homo sapiens (Human), [attribute ViaFigAPICV1] 1234; Some text, , 
	 Found fig|9606.3.peg.26823, Homo sapiens (Human), [attribute ViaFigAPICV2] 1234; Some text, , 

Delete the term in the first CV:
This search should come up with ViaFigAPICV2:
	 Found fig|9606.3.peg.26823, ViaFigAPICV2, 1234; Some text

Delete the term in the second CV:
This search should come up empty:
	 Nothing found

Test search_cv_file:  MAPK in GO
	 Found GO	GO:0000161	MAPKKK cascade during osmolarity sensing
	 Found GO	GO:0000165	MAPKKK cascade
	 Found GO	GO:0000167	activation of MAPKKK activity during osmolarity sensing
	 Found GO	GO:0000168	activation of MAPKK activity during osmolarity sensing
	 Found GO	GO:0000169	activation of MAPK activity during osmolarity sensing
	 Found GO	GO:0000173	inactivation of MAPK activity during osmolarity sensing
	 Found GO	GO:0000174	inactivation of MAPK (mating sensu Saccharomyces) OBSOLETE
	 Found GO	GO:0000185	activation of MAPKKK activity
	 Found GO	GO:0000186	activation of MAPKK activity
	 Found GO	GO:0000187	activation of MAPK activity
	 Found GO	GO:0000188	inactivation of MAPK activity
	 Found GO	GO:0000189	nuclear translocation of MAPK
	 Found GO	GO:0000190	MAPKKK cascade (pseudohyphal growth) OBSOLETE
	 Found GO	GO:0000191	activation of MAPKKK (pseudohyphal growth) OBSOLETE
	 Found GO	GO:0000192	activation of MAPKK (pseudohyphal growth) OBSOLETE
	 Found GO	GO:0000193	activation of MAPK (pseudohyphal growth) OBSOLETE
	 Found GO	GO:0000194	inactivation of MAPK (pseudohyphal growth) OBSOLETE
	 Found GO	GO:0000195	nuclear translocation of MAPK (pseudohyphal growth) OBSOLETE
	 Found GO	GO:0000196	MAPKKK cascade during cell wall biogenesis
	 Found GO	GO:0000197	activation of MAPKKK activity during cell wall biogenesis
	 Found GO	GO:0000198	activation of MAPKK activity during cell wall biogenesis
	 Found GO	GO:0000199	activation of MAPK activity during cell wall biogenesis
	 Found GO	GO:0000200	inactivation of MAPK activity during cell wall biogenesis
	 Found GO	GO:0000201	nuclear translocation of MAPK during cell wall biogenesis
	 Found GO	GO:0000202	MAPKKK cascade during sporulation (sensu Saccharomyces) OBSOLETE
	 Found GO	GO:0000203	activation of MAPKKK during sporulation (sensu Saccharomyces) OBSOLETE
	 Found GO	GO:0000204	activation of MAPKK during sporulation (sensu Saccharomyces) OBSOLETE
	 Found GO	GO:0000205	activation of MAPK during sporulation (sensu Saccharomyces) OBSOLETE
	 Found GO	GO:0000206	inactivation of MAPK during sporulation (sensu Saccharomyces) OBSOLETE
	 Found GO	GO:0000207	nuclear translocation of MAPK during sporulation (sensu Saccharomyces) OBSOLETE
	 Found GO	GO:0000208	nuclear translocation of MAPK during osmolarity sensing
	 Found GO	GO:0007244	MAPKKK cascade (mating sensu Saccharomyces) OBSOLETE
	 Found GO	GO:0007245	activation of MAPKKK (mating sensu Saccharomyces) OBSOLETE
	 Found GO	GO:0007246	activation of MAPKK (mating sensu Saccharomyces) OBSOLETE
	 Found GO	GO:0007247	activation of MAPK (mating sensu Saccharomyces) OBSOLETE
	 Found GO	GO:0007248	nuclear translocation of MAPK (mating sensu Saccharomyces) OBSOLETE
	 Found GO	GO:0030438	MAPKKK cascade during sporulation (sensu Fungi) OBSOLETE
	 Found GO	GO:0030439	activation of MAPK during sporulation (sensu Fungi) OBSOLETE
	 Found GO	GO:0030440	activation of MAPKK during sporulation (sensu Fungi) OBSOLETE
	 Found GO	GO:0030441	activation of MAPKKK during sporulation (sensu Fungi) OBSOLETE
	 Found GO	GO:0030442	inactivation of MAPK during sporulation (sensu Fungi) OBSOLETE
	 Found GO	GO:0030443	nuclear translocation of MAPK during sporulation (sensu Fungi) OBSOLETE
	 Found GO	GO:0030455	MAPKKK cascade (mating sensu Fungi) OBSOLETE
	 Found GO	GO:0030456	activation of MAPK (mating sensu Fungi) OBSOLETE
	 Found GO	GO:0030457	activation of MAPKK (mating sensu Fungi) OBSOLETE
	 Found GO	GO:0030458	activation of MAPKKK (mating sensu Fungi) OBSOLETE
	 Found GO	GO:0030459	inactivation of MAPK (mating sensu Fungi) OBSOLETE
	 Found GO	GO:0030460	nuclear translocation of MAPK (mating sensu Fungi) OBSOLETE
	 Found GO	GO:0043405	regulation of MAPK activity
	 Found GO	GO:0043406	positive regulation of MAPK activity
	 Found GO	GO:0043407	negative regulation of MAPK activity
	 Found GO	GO:0043408	regulation of MAPKKK cascade
	 Found GO	GO:0043409	negative regulation of MAPKKK cascade
	 Found GO	GO:0043410	positive regulation of MAPKKK cascade
	 Found GO	GO:0045204	MAPK export from nucleus
	 Found GO	GO:0045205	MAPK transporter activity
	 Found GO	GO:0045206	MAPK phosphatase transporter activity
	 Found GO	GO:0045208	MAPK phosphatase export from nucleus
	 Found GO	GO:0045209	MAPK phosphatase export from nucleus, leptomycin B sensitive
	 Found GO	GO:0051389	inactivation of MAPKK activity
	 Found GO	GO:0051390	inactivation of MAPKKK activity
	 Found GO	GO:0051403	stress-activated MAPK cascade
done

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