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revision 1.3, Thu Jun 3 16:30:40 2004 UTC revision 1.5, Mon Dec 5 18:56:38 2005 UTC
# Line 1  Line 1 
1    #
2  use P2Pupdate;  # Copyright (c) 2003-2006 University of Chicago and Fellowship
3    # for Interpretations of Genomes. All Rights Reserved.
4    #
5    # This file is part of the SEED Toolkit.
6    #
7    # The SEED Toolkit is free software. You can redistribute
8    # it and/or modify it under the terms of the SEED Toolkit
9    # Public License.
10    #
11    # You should have received a copy of the SEED Toolkit Public License
12    # along with this program; if not write to the University of Chicago
13    # at info@ci.uchicago.edu or the Fellowship for Interpretation of
14    # Genomes at veronika@thefig.info or download a copy from
15    # http://www.theseed.org/LICENSE.TXT.
16    #
17    
18  use FIG;  use FIG;
 my $fig = new FIG;  
19    
20  $usage = "usage: sync_new_system Dir";  $usage = "usage: sync_new_system Dir MakeAssignments";
21  (  (
22   ($dir = shift @ARGV) && (-d $dir)   ($dir = shift @ARGV) && (-d $dir)
23  )  )
24      || die $usage;      || die $usage;
25    
26    my $make_assignments = (@ARGV > 0) ? $ARGV[0] : "";
27    
28  my $assignments_package = "$dir/assignments_package";  my $assignments_package = "$dir/assignments_package";
29  my $annotations_package = "$dir/annotations_package";  my $annotations_package = "$dir/annotations_package";
30  my $trans_rules_package = "$dir/trans_rules_package";  my $trans_rules_package = "$dir/trans_rules_package";
31  my $subsys_package      = "$dir/subsys_package";  my $subsys_package      = "$dir/subsys_package";
32    
33  &FIG::run("$FIG_Config::bin/install_assignments $assignments_package");  &FIG::run("$FIG_Config::bin/install_assignments $assignments_package $make_assignments");
34  &FIG::run("$FIG_Config::bin/install_annotations $annotations_package");  &FIG::run("$FIG_Config::bin/install_annotations $annotations_package");
35  &FIG::run("$FIG_Config::bin/install_translation_rules update $trans_rules_package");  &FIG::run("$FIG_Config::bin/install_translation_rules update $trans_rules_package");
36  &FIG::run("$FIG_Config::bin/install_subsystems $subsys_package");  &FIG::run("$FIG_Config::bin/install_subsystems $subsys_package");

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