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revision 1.3, Sun Oct 11 19:57:00 2009 UTC revision 1.4, Tue Oct 20 20:22:08 2009 UTC
# Line 17  Line 17 
17  FASTA format. Sections of DNA that occur inside a feature are shown in upper  FASTA format. Sections of DNA that occur inside a feature are shown in upper
18  case. DNA between known features is shown in lower case.  case. DNA between known features is shown in lower case.
19    
20    This is a pipe command. Input is from the standard input and output is to the
21    standard output.
22    
23  =head2 Command-Line Options  =head2 Command-Line Options
24    
25  =over 4  =over 4
# Line 46  Line 49 
49  if (! $opted) {  if (! $opted) {
50      print "usage: svr_upstream [--skipGene] [--size=200] [-url=http://...] <input >output\n";      print "usage: svr_upstream [--skipGene] [--size=200] [-url=http://...] <input >output\n";
51  } else {  } else {
     # Protect from errors.  
     eval {  
52          # Get the server object.          # Get the server object.
53          my $sapServer = SAPserver->new(url => $url);          my $sapServer = SAPserver->new(url => $url);
54          # The main loop processes chunks of input, 100 lines at a time.          # The main loop processes chunks of input, 100 lines at a time.
# Line 91  Line 92 
92                  }                  }
93              }              }
94          }          }
     };  
     if ($@) {  
         print STDERR "FATAL ERROR: $@\n";  
     }  
95  }  }
96    
97    
98  1;  
99    

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