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Revision 1.3 - (download) (as text) (annotate)
Tue Nov 16 21:32:10 2010 UTC (8 years, 11 months ago) by gdpusch
Branch: MAIN
CVS Tags: mgrast_dev_08112011, mgrast_dev_08022011, rast_rel_2014_0912, myrast_rel40, mgrast_dev_05262011, mgrast_dev_04082011, mgrast_version_3_2, mgrast_dev_12152011, mgrast_dev_06072011, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2011_0119, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, mgrast_dev_04012011, myrast_33, rast_rel_2011_0928, mgrast_dev_04052011, mgrast_dev_02222011, mgrast_dev_10262011, HEAD
Changes since 1.2: +1 -1 lines
Fixed typo in POD section.

# -*- perl -*-

#
# This is a SAS Component
#

########################################################################
# Copyright (c) 2003-2008 University of Chicago and Fellowship
# for Interpretations of Genomes. All Rights Reserved.
#
# This file is part of the SEED Toolkit.
# 
# The SEED Toolkit is free software. You can redistribute
# it and/or modify it under the terms of the SEED Toolkit
# Public License. 
#
# You should have received a copy of the SEED Toolkit Public License
# along with this program; if not write to the University of Chicago
# at info@ci.uchicago.edu or the Fellowship for Interpretation of
# Genomes at veronika@thefig.info or download a copy from
# http://www.theseed.org/LICENSE.TXT.
########################################################################

my $usage = "svr_seed_table SEED_OrgDir > org.tab";

=head1 svr_seed_to_table SEED_OrgDir > org.tab

Extract a tab-separated feature table from a SEED Genome Directory.
Table format is:

Feature_ID     Location     Function

=cut

use strict;
use warnings;

use SeedV;

my ($org_dir) = @ARGV;
if ($org_dir =~ m/^-{1,2}help/o) {
    print STDERR "   usage: $usage\n";
    exit(0);
}

(-d $org_dir) || die "Organism directory \'$org_dir\' does not exist";

my $seedV = SeedV->new($org_dir);
$seedV->write_features_for_comparison(\*STDOUT);

exit(0);

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