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Revision 1.28 - (view) (download) (as text) (annotate) - [select for diffs]
Sat May 3 20:42:40 2014 UTC (5 years, 6 months ago) by fangfang
Branch: MAIN
CVS Tags: HEAD, rast_rel_2014_0729, rast_rel_2014_0912
Changes since 1.27: +5 -5 lines
Diff to previous 1.27
add core seed db

Revision 1.27 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 2 19:54:18 2013 UTC (6 years, 1 month ago) by fangfang
Branch: MAIN
Changes since 1.26: +5 -4 lines
Diff to previous 1.26
change default db to PUBSEED

Revision 1.26 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Apr 27 16:11:56 2011 UTC (8 years, 6 months ago) by fangfang
Branch: MAIN
CVS Tags: mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_rel40, rast_rel_2011_0928
Changes since 1.25: +0 -1 lines
Diff to previous 1.25
remove debug lines

Revision 1.25 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Apr 27 16:11:16 2011 UTC (8 years, 6 months ago) by fangfang
Branch: MAIN
Changes since 1.24: +4 -3 lines
Diff to previous 1.24
update pubseed db

Revision 1.24 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Apr 18 16:01:33 2011 UTC (8 years, 7 months ago) by fangfang
Branch: MAIN
Changes since 1.23: +1 -1 lines
Diff to previous 1.23
update

Revision 1.23 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Feb 16 20:45:11 2011 UTC (8 years, 9 months ago) by fangfang
Branch: MAIN
CVS Tags: mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, myrast_33
Changes since 1.22: +9 -1 lines
Diff to previous 1.22
add -a n_processor option

Revision 1.22 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Feb 16 20:16:04 2011 UTC (8 years, 9 months ago) by fangfang
Branch: MAIN
Changes since 1.21: +4 -5 lines
Diff to previous 1.21
add support for ppseed

Revision 1.21 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Dec 29 22:13:40 2010 UTC (8 years, 10 months ago) by fangfang
Branch: MAIN
CVS Tags: rast_rel_2011_0119
Changes since 1.20: +6 -6 lines
Diff to previous 1.20
update default values

Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Dec 29 21:49:39 2010 UTC (8 years, 10 months ago) by fangfang
Branch: MAIN
Changes since 1.19: +6 -4 lines
Diff to previous 1.19
update

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 27 00:07:14 2010 UTC (8 years, 10 months ago) by fangfang
Branch: MAIN
Changes since 1.18: +43 -2 lines
Diff to previous 1.18
more options and new trimming

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Dec 3 05:50:44 2010 UTC (8 years, 11 months ago) by fangfang
Branch: MAIN
CVS Tags: rast_rel_2010_1206
Changes since 1.17: +1 -1 lines
Diff to previous 1.17
update pod

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Nov 29 20:01:38 2010 UTC (8 years, 11 months ago) by fangfang
Branch: MAIN
Changes since 1.16: +2 -2 lines
Diff to previous 1.16
update pod

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Nov 29 19:56:56 2010 UTC (8 years, 11 months ago) by fangfang
Branch: MAIN
Changes since 1.15: +2 -3 lines
Diff to previous 1.15
update pod

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Nov 29 19:49:56 2010 UTC (8 years, 11 months ago) by fangfang
Branch: MAIN
Changes since 1.14: +48 -16 lines
Diff to previous 1.14
update options

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Nov 27 00:34:52 2010 UTC (8 years, 11 months ago) by fangfang
Branch: MAIN
Changes since 1.13: +2 -2 lines
Diff to previous 1.13
update usage

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Nov 27 00:27:44 2010 UTC (8 years, 11 months ago) by fangfang
Branch: MAIN
Changes since 1.12: +91 -39 lines
Diff to previous 1.12
update usage

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 17 17:35:52 2010 UTC (9 years ago) by fangfang
Branch: MAIN
Changes since 1.11: +4 -3 lines
Diff to previous 1.11
fix performance bug

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Nov 16 22:53:51 2010 UTC (9 years ago) by fangfang
Branch: MAIN
Changes since 1.10: +3 -2 lines
Diff to previous 1.10
add url option

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Nov 14 22:08:51 2010 UTC (9 years ago) by fangfang
Branch: MAIN
Changes since 1.9: +1 -1 lines
Diff to previous 1.9
more options

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Nov 14 21:58:22 2010 UTC (9 years ago) by fangfang
Branch: MAIN
Changes since 1.8: +7 -8 lines
Diff to previous 1.8
update usage

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Nov 14 21:56:19 2010 UTC (9 years ago) by fangfang
Branch: MAIN
Changes since 1.7: +9 -1 lines
Diff to previous 1.7
more detailed usage

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Nov 14 21:55:14 2010 UTC (9 years ago) by fangfang
Branch: MAIN
Changes since 1.6: +2 -0 lines
Diff to previous 1.6
more options

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Nov 14 21:41:03 2010 UTC (9 years ago) by fangfang
Branch: MAIN
Changes since 1.5: +6 -1 lines
Diff to previous 1.5
add documentation for report file

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 11 07:53:13 2010 UTC (9 years ago) by fangfang
Branch: MAIN
Changes since 1.4: +2 -0 lines
Diff to previous 1.4
use the environmental variable SAS_SERVER to direct to SEED or PSEED

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 11 07:41:11 2010 UTC (9 years ago) by fangfang
Branch: MAIN
Changes since 1.3: +138 -23 lines
Diff to previous 1.3
support remote/local search

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 27 21:17:27 2010 UTC (9 years ago) by fangfang
Branch: MAIN
Changes since 1.2: +3 -3 lines
Diff to previous 1.2
bug fix

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 27 21:06:18 2010 UTC (9 years ago) by fangfang
Branch: MAIN
Changes since 1.1: +11 -1 lines
Diff to previous 1.1
options for max e-value and min identity cutoff

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 27 20:28:43 2010 UTC (9 years ago) by fangfang
Branch: MAIN
profile search using psiblast

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