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Revision 1.24 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 6 20:01:07 2010 UTC (9 years, 4 months ago) by overbeek
Branch: MAIN
CVS Tags: HEAD, mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912
Changes since 1.23: +7 -9 lines
Diff to previous 1.23
fix command line arguments

Revision 1.23 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 30 17:27:43 2010 UTC (9 years, 5 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2010_0928
Changes since 1.22: +24 -5 lines
Diff to previous 1.22
more cat-removing

Revision 1.22 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 30 16:32:07 2010 UTC (9 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.21: +11 -3 lines
Diff to previous 1.21
MOds for using SeedAware

Revision 1.21 - (view) (download) (as text) (annotate) - [select for diffs]
Tue May 18 19:38:33 2010 UTC (9 years, 9 months ago) by parrello
Branch: MAIN
CVS Tags: rast_rel_2010_0827
Changes since 1.20: +4 -0 lines
Diff to previous 1.20
Documentation fixes.

Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Mar 24 23:11:06 2010 UTC (9 years, 11 months ago) by overbeek
Branch: MAIN
CVS Tags: rast_rel_2010_0526
Changes since 1.19: +2 -2 lines
Diff to previous 1.19
minor fixes

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Mar 24 22:42:08 2010 UTC (9 years, 11 months ago) by overbeek
Branch: MAIN
Changes since 1.18: +94 -37 lines
Diff to previous 1.18
patchup after bad update

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Mar 24 21:39:04 2010 UTC (9 years, 11 months ago) by overbeek
Branch: MAIN
Changes since 1.17: +43 -101 lines
Diff to previous 1.17
remove dependencies on SEED

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Mar 14 13:27:49 2010 UTC (9 years, 11 months ago) by parrello
Branch: MAIN
Changes since 1.16: +14 -8 lines
Diff to previous 1.16
Added support for running locally.

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Mar 9 22:29:13 2010 UTC (9 years, 11 months ago) by overbeek
Branch: MAIN
Changes since 1.15: +4 -0 lines
Diff to previous 1.15
bad bug in merging similarities

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Mar 6 23:53:18 2010 UTC (9 years, 11 months ago) by overbeek
Branch: MAIN
Changes since 1.14: +34 -3 lines
Diff to previous 1.14
use only blast, not blat

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Mar 5 03:24:38 2010 UTC (9 years, 11 months ago) by overbeek
Branch: MAIN
Changes since 1.13: +45 -29 lines
Diff to previous 1.13
now it is symetric

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Feb 16 19:25:05 2010 UTC (10 years ago) by overbeek
Branch: MAIN
Changes since 1.12: +1 -1 lines
Diff to previous 1.12
fix typo

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 17 21:37:35 2009 UTC (10 years, 2 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2010_0118
Changes since 1.11: +2 -2 lines
Diff to previous 1.11
fix bug

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Dec 15 17:43:32 2009 UTC (10 years, 2 months ago) by olson
Branch: MAIN
Changes since 1.10: +54 -12 lines
Diff to previous 1.10
add support for pulling fids & locations from SeedV when a g1dir is given.

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Dec 12 23:42:11 2009 UTC (10 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.9: +59 -19 lines
Diff to previous 1.9
fix count in context

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Dec 1 15:36:53 2009 UTC (10 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.8: +10 -5 lines
Diff to previous 1.8
add bit-sc to table

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 25 20:02:00 2009 UTC (10 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.7: +0 -1 lines
Diff to previous 1.7
handle deleted genomes

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 25 19:58:08 2009 UTC (10 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.6: +10 -1 lines
Diff to previous 1.6
handle deleted genomes

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Nov 24 21:21:01 2009 UTC (10 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.5: +6 -2 lines
Diff to previous 1.5
handle PEGs with missing translations

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Nov 24 15:31:48 2009 UTC (10 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.4: +1 -1 lines
Diff to previous 1.4
minor fix of a comment

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Nov 8 16:49:38 2009 UTC (10 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.3: +1 -1 lines
Diff to previous 1.3
minor error

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Nov 8 16:48:10 2009 UTC (10 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.2: +24 -16 lines
Diff to previous 1.2
add count of pairs in context

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Nov 8 16:27:44 2009 UTC (10 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.1: +19 -12 lines
Diff to previous 1.1
context as pairs and use of BLAT

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Nov 7 18:57:00 2009 UTC (10 years, 3 months ago) by overbeek
Branch: MAIN
a tool for detecting corresponding genes between two genomes

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