[Bio] / FigKernelScripts / svr_contigs_in_genome.pl Repository:
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revision 1.1, Tue Jul 20 21:12:12 2010 UTC revision 1.2, Wed Jul 21 18:57:31 2010 UTC
# Line 44  Line 44 
44  my $column = '';  my $column = '';
45  my $opted =  GetOptions('url=s' => \$url, 'c=i' => \$column);  my $opted =  GetOptions('url=s' => \$url, 'c=i' => \$column);
46  if (! $opted) {  if (! $opted) {
47      print "usage: svr_contigs_in_genome [--url=http://...] <input >output\n";      print "usage: svr_contigs_in_genome [--url=http://...] [--c=N] <input >output\n";
48  } else {  } else {
     # Get the list of output field names from the remaining positional parameters.  
     my @outputs = @ARGV;  
49      # Get the server object.      # Get the server object.
50      my $sapServer = SAPserver->new(url => $url);      my $sapServer = SAPserver->new(url => $url);
51      # The main loop processes chunks of input.      # The main loop processes chunks of input.

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