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Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jan 22 14:40:17 2012 UTC (7 years, 10 months ago) by overbeek
Branch: MAIN
CVS Tags: HEAD, mgrast_version_3_2, rast_rel_2014_0729, rast_rel_2014_0912
Changes since 1.14: +13 -1 lines
Diff to previous 1.14
allow option to preserve sequence order

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jun 5 04:51:17 2011 UTC (8 years, 5 months ago) by fangfang
Branch: MAIN
CVS Tags: mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, myrast_rel40, rast_rel_2011_0928
Changes since 1.13: +3 -2 lines
Diff to previous 1.13
add option --anysymbol

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Mar 20 16:36:36 2011 UTC (8 years, 8 months ago) by fangfang
Branch: MAIN
CVS Tags: mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_release_3_0_3, mgrast_release_3_0_4, myrast_33
Changes since 1.12: +3 -2 lines
Diff to previous 1.12
add multithread support for mafft

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 27 00:06:53 2010 UTC (8 years, 10 months ago) by fangfang
Branch: MAIN
CVS Tags: mgrast_dev_02212011, mgrast_dev_02222011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, rast_rel_2011_0119
Changes since 1.11: +16 -8 lines
Diff to previous 1.11
add -z option for aligning end regions with clustal (zero end gap penalty)

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Dec 3 08:14:53 2010 UTC (8 years, 11 months ago) by fangfang
Branch: MAIN
CVS Tags: rast_rel_2010_1206
Changes since 1.10: +0 -1 lines
Diff to previous 1.10
fixed incorrect perl env

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 17 16:40:46 2010 UTC (9 years ago) by fangfang
Branch: MAIN
Changes since 1.9: +1 -1 lines
Diff to previous 1.9
update usage

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 17 16:39:45 2010 UTC (9 years ago) by fangfang
Branch: MAIN
Changes since 1.8: +1 -1 lines
Diff to previous 1.8
fix usage bug

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 17 16:38:38 2010 UTC (9 years ago) by fangfang
Branch: MAIN
Changes since 1.7: +35 -25 lines
Diff to previous 1.7
update usage

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Nov 16 22:08:48 2010 UTC (9 years ago) by fangfang
Branch: MAIN
Changes since 1.6: +3 -1 lines
Diff to previous 1.6
add url option

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 10 16:55:58 2010 UTC (9 years ago) by fangfang
Branch: MAIN
Changes since 1.5: +19 -28 lines
Diff to previous 1.5
move code to AlignTree.pm

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 27 16:29:42 2010 UTC (9 years ago) by fangfang
Branch: MAIN
Changes since 1.4: +38 -14 lines
Diff to previous 1.4
Add -local option. The default is to align seqs remotely on the server.

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Oct 4 20:25:59 2010 UTC (9 years, 1 month ago) by fangfang
Branch: MAIN
Changes since 1.3: +3 -3 lines
Diff to previous 1.3
change to the POD description

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Oct 4 15:17:20 2010 UTC (9 years, 1 month ago) by fangfang
Branch: MAIN
Changes since 1.2: +0 -2 lines
Diff to previous 1.2
fixed pod error in svr_align_seqs

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 29 21:29:12 2010 UTC (9 years, 1 month ago) by fangfang
Branch: MAIN
Changes since 1.1: +2 -2 lines
Diff to previous 1.1
Modify POD for -alg|-algorithm option for mafft.

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 29 21:23:33 2010 UTC (9 years, 1 month ago) by fangfang
Branch: MAIN
add svr_align_seqs.pl

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