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Revision 1.1 - (download) (as text) (annotate)
Thu Jan 31 21:19:40 2008 UTC (11 years, 9 months ago) by overbeek
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, myrast_rel40, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, rast_rel_2008_04_23, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
subsys_info is subsystem information for Verionika

use FIG;
my $fig = new FIG;

foreach $subsys ($fig->all_subsystems)
{   
    my $subsysO = $fig->get_subsystem($subsys);
    my $has_notes = "no";
    my $has_desc  = "no";
    my $has_diagrams = "no";

    if ($txt = $subsysO->get_notes)
    {
        $has_notes = "yes";
        if ($txt = $subsysO->get_description)
        {
            $has_desc = "yes";
        }
    }
    my @diagrams = $subsysO->get_diagrams;
    if (@diagrams > 0)
    {
        $has_diagrams = "yes";
    }

    my @subC = $subsysO->get_subset_namesC;
    $has_subsets = (@subC > 0) ? "yes" : "no";

    my $curator = $subsysO->get_curator;
    $curator =~ s/master://;
    my $created = $subsysO->get_created;
    my $last_updated = $subsysO->get_last_updated;
    my @roles = $subsysO->get_roles;
    my @genomes = $subsysO->get_genomes;
    my $num_roles = @roles;
    my $num_genomes = @genomes;
    my @vc = $subsysO->get_variant_codes;
    for ($i=0; ($vc[$i] eq "0") || ($vc[$i] eq "-1"); $i++) {}
    my $has_active = ($i < @vc) ? "yes" : "no";
    my $has_dup = 0;
    my $has_single = 0;
    foreach $role (@roles)
    {
        foreach $genome (@genomes)
        {
            my @pegs = $subsysO->get_pegs_from_cell($genome,$role);
            if (@pegs == 1)        { $has_single++ }
            elsif (@pegs > 1)      { $has_dup++ }
        }
    }
    my $class = $subsysO->get_classification;
    $has_classification = ($class && (@$class > 0)) ? @$class : 0;
    my $reactions = $subsysO->get_reactions;
    $num_reactions = $reactions ? keys(%$reactions) : 0;
    print join("\t",($curator,
		     $subsys,
		     &FIG::epoch_to_readable($created),
		     &FIG::epoch_to_readable($last_updated),
		     $num_roles,
		     $num_genomes,
		     $has_active,
		     $has_single,
		     $has_dup,
		     $has_classification,
		     $num_reactions,
		     $has_subsets,
		     $has_diagrams,
		     $has_notes,
		     $has_desc)),"\n";
}

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