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Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Wed May 9 14:35:43 2007 UTC (12 years, 10 months ago) by overbeek
Branch: MAIN
CVS Tags: HEAD, mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_2008_0924, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912, rast_release_2008_09_29
Changes since 1.13: +4 -2 lines
Diff to previous 1.13
fix problem when repeats occur

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Feb 9 03:50:05 2007 UTC (13 years, 1 month ago) by overbeek
Branch: MAIN
Changes since 1.12: +2 -1 lines
Diff to previous 1.12
make connections tighter in forming alignments

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Mar 21 15:53:30 2006 UTC (14 years ago) by overbeek
Branch: MAIN
Changes since 1.11: +14 -3 lines
Diff to previous 1.11
fixes to split_and_trim

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Mar 1 20:09:15 2006 UTC (14 years, 1 month ago) by overbeek
Branch: MAIN
Changes since 1.10: +21 -1 lines
Diff to previous 1.10
fixes to split_and_trim stuff

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 5 18:56:38 2005 UTC (14 years, 3 months ago) by olson
Branch: MAIN
CVS Tags: caBIG-05Apr06-00, caBIG-13Feb06-00
Changes since 1.9: +17 -0 lines
Diff to previous 1.9
Add license words.

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Tue May 24 14:35:10 2005 UTC (14 years, 10 months ago) by overbeek
Branch: MAIN
CVS Tags: Root-bobdev_news, caBIG-00-00-00, caBIG-dataload-0, merge-bobdev_news-1, merge-bobdev_news-2, merge-bodev_news-3, merge-trunktag-bobdev_news-1, merge-trunktag-bobdev_news-2, merge-trunktag-bodev_news-3
Branch point for: Branch-bobdev_news
Changes since 1.8: +1 -1 lines
Diff to previous 1.8
fix to split_and_trim

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Tue May 10 12:03:39 2005 UTC (14 years, 10 months ago) by overbeek
Branch: MAIN
Changes since 1.7: +2 -1 lines
Diff to previous 1.7
fixes to using trees under subsystems

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Mon May 9 16:58:07 2005 UTC (14 years, 10 months ago) by overbeek
Branch: MAIN
Changes since 1.6: +2 -2 lines
Diff to previous 1.6
Increase max number of hits retained. -- /gdp

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Mon May 9 02:14:28 2005 UTC (14 years, 10 months ago) by overbeek
Branch: MAIN
Changes since 1.5: +4 -1 lines
Diff to previous 1.5
Translate selenocystein chars to "X". -- /gdp

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Sat May 7 20:57:47 2005 UTC (14 years, 10 months ago) by overbeek
Branch: MAIN
Changes since 1.4: +5 -2 lines
Diff to previous 1.4
add routines for BigFC

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Mon May 2 23:19:43 2005 UTC (14 years, 11 months ago) by overbeek
Branch: MAIN
Changes since 1.3: +6 -0 lines
Diff to previous 1.3
make distances symetric in split_and_trim

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Mon May 2 23:11:21 2005 UTC (14 years, 11 months ago) by overbeek
Branch: MAIN
Changes since 1.2: +7 -5 lines
Diff to previous 1.2
fix to distance matrixes in split_and_trim

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Apr 14 11:45:18 2005 UTC (14 years, 11 months ago) by overbeek
Branch: MAIN
Changes since 1.1: +1 -1 lines
Diff to previous 1.1
use neighbor joining, not fitch, to build trees

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Apr 12 15:34:25 2005 UTC (14 years, 11 months ago) by overbeek
Branch: MAIN
CVS Tags: efrank-preMakefileToStandardMk
fix to show_missing with matches

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