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| 1 : | overbeek | 1.1 | #!/Volumes/FIGdisk/FIGdisk.Nov20/env/mac/bin/perl |
| 2 : | |||
| 3 : | BEGIN { | ||
| 4 : | @INC = qw( | ||
| 5 : | /Volumes/FIGdisk/FIGdisk.Nov20/env/mac/lib/perl5/5.8.4/darwin-2level | ||
| 6 : | /Volumes/FIGdisk/FIGdisk.Nov20/env/mac/lib/perl5/5.8.4 | ||
| 7 : | /Volumes/FIGdisk/FIGdisk.Nov20/env/mac/lib/perl5/site_perl/5.8.4/darwin-2level | ||
| 8 : | /Volumes/FIGdisk/FIGdisk.Nov20/env/mac/lib/perl5/site_perl/5.8.4 | ||
| 9 : | /Volumes/FIGdisk/FIGdisk.Nov20/env/mac/lib/perl5/site_perl | ||
| 10 : | ); | ||
| 11 : | } | ||
| 12 : | use Data::Dumper; | ||
| 13 : | use Carp; | ||
| 14 : | # Following block is expanded by switch_to_release to add use lib directives | ||
| 15 : | # to point at the correct locations in the release directory. | ||
| 16 : | #BEGIN switch_to_release generated code | ||
| 17 : | use lib '/Volumes/FIGdisk/FIGdisk.Nov20/dist/releases/ross/mac/lib'; | ||
| 18 : | use lib '/Volumes/FIGdisk/FIGdisk.Nov20/dist/releases/ross/mac/lib/FigKernelPackages'; | ||
| 19 : | $ENV{PATH} = "/Volumes/FIGdisk/FIGdisk.Nov20/FIG/bin:/Volumes/FIGdisk/FIGdisk.Nov20/env/mac/bin:$ENV{PATH}"; | ||
| 20 : | $ENV{BLASTMAT} = "/Volumes/FIGdisk/FIGdisk.Nov20/BLASTMAT"; | ||
| 21 : | #END switch_to_release generated code | ||
| 22 : | |||
| 23 : | use lib "/Volumes/FIGdisk/FIGdisk.Nov20/config"; | ||
| 24 : | use FIG_Config; | ||
| 25 : | |||
| 26 : | #### END tool_hdr #### | ||
| 27 : | use FIG; | ||
| 28 : | |||
| 29 : | $usage = "usage: sort_and_split_bbhs BBHs Dir"; | ||
| 30 : | |||
| 31 : | ( | ||
| 32 : | ($bbhs = shift @ARGV) && | ||
| 33 : | ($dir = shift @ARGV) | ||
| 34 : | ) | ||
| 35 : | || die $usage; | ||
| 36 : | |||
| 37 : | &FIG::verify_dir($dir); | ||
| 38 : | |||
| 39 : | open(BBHS,"sort -u $bbhs |") || die "could not open $bbhs"; | ||
| 40 : | $last = ""; | ||
| 41 : | $bbh = <BBHS>; | ||
| 42 : | while ($bbh && ($bbh =~ /^(\S+)/)) | ||
| 43 : | { | ||
| 44 : | $curr = $1; | ||
| 45 : | if (($genome = &FIG::genome_of($curr)) ne $last) | ||
| 46 : | { | ||
| 47 : | if ($last) | ||
| 48 : | { | ||
| 49 : | close(BYGENOME); | ||
| 50 : | } | ||
| 51 : | $last = $genome; | ||
| 52 : | open(BYGENOME,">$dir/$genome") || die "could not open $dir/$genome"; | ||
| 53 : | } | ||
| 54 : | while ($bbh && ($bbh =~ /^(\S+)/) && ($1 eq $curr)) | ||
| 55 : | { | ||
| 56 : | print BYGENOME $bbh; | ||
| 57 : | $bbh = <BBHS>; | ||
| 58 : | } | ||
| 59 : | } | ||
| 60 : | close(BYGENOME); |
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