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Revision 1.2 - (download) (as text) (annotate)
Tue Jan 5 20:57:53 2010 UTC (9 years, 10 months ago) by parrello
Branch: MAIN
CVS Tags: mgrast_dev_08112011, mgrast_dev_08022011, rast_rel_2014_0912, myrast_rel40, mgrast_dev_05262011, mgrast_dev_04082011, rast_rel_2010_0928, mgrast_version_3_2, mgrast_dev_12152011, mgrast_dev_06072011, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, rast_rel_2011_0119, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, mgrast_dev_04012011, rast_rel_2010_0827, myrast_33, rast_rel_2011_0928, mgrast_dev_04052011, mgrast_dev_02222011, mgrast_dev_10262011, HEAD
Changes since 1.1: +2 -2 lines
Removed genetic codes so program fits better on a page.

#!/usr/bin/perl -w

    use strict;
    use SeedEnv;

    my $sap = SAPserver->new();

    my $genomeHash = $sap->all_genomes();
    my @genomeIDs = sort keys %$genomeHash;
    my $metricHash = $sap->genome_metrics(-ids => \@genomeIDs);
    
    for my $genomeID (@genomeIDs) {
        my $name = $genomeHash->{$genomeID};
        my ($contigs, $bases) = @{$metricHash->{$genomeID}};
        print join("\t", $genomeID, $name, $contigs, $bases) . "\n";
    }


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