[Bio] / FigKernelScripts / select_genomes_for_sprout.pl Repository:
ViewVC logotype

Annotation of /FigKernelScripts/select_genomes_for_sprout.pl

Parent Directory Parent Directory | Revision Log Revision Log


Revision 1.2 - (view) (download) (as text)

1 : olson 1.2 #
2 :     # Copyright (c) 2003-2006 University of Chicago and Fellowship
3 :     # for Interpretations of Genomes. All Rights Reserved.
4 :     #
5 :     # This file is part of the SEED Toolkit.
6 :     #
7 :     # The SEED Toolkit is free software. You can redistribute
8 :     # it and/or modify it under the terms of the SEED Toolkit
9 :     # Public License.
10 :     #
11 :     # You should have received a copy of the SEED Toolkit Public License
12 :     # along with this program; if not write to the University of Chicago
13 :     # at info@ci.uchicago.edu or the Fellowship for Interpretation of
14 :     # Genomes at veronika@thefig.info or download a copy from
15 :     # http://www.theseed.org/LICENSE.TXT.
16 :     #
17 :    
18 : overbeek 1.1 use FIG;
19 :     my $fig = new FIG;
20 :    
21 :     foreach $genome ($fig->genomes("complete"))
22 :     {
23 :     $gs = $fig->genus_species($genome);
24 :     if ($fig->is_prokaryotic($genome) &&
25 :     ($fig->is_complete($genome) ||
26 :     ($gs =~ /^Vibrio/) ||
27 :     ($gs =~ /^Campylobacter jejuni/) ||
28 :     ($gs =~ /^Listeria monocytogenes/) ||
29 :     ($gs =~ /^Staphylococcus aureus/) ||
30 :     ($gs =~ /^Streptococcus pyogenes/) ||
31 :     ($gs =~ /^Streptococcus pneumoniae/)
32 :     ))
33 :     {
34 :     print "$genome\t$gs\n";
35 :     }
36 :     }

MCS Webmaster
ViewVC Help
Powered by ViewVC 1.0.3