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Revision 1.36 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jun 30 15:53:03 2008 UTC (11 years, 4 months ago) by redwards
Branch: MAIN
CVS Tags: HEAD, mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_2008_0924, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912, rast_release_2008_09_29
Changes since 1.35: +4 -1 lines
Diff to previous 1.35
getting rid of need for strain info

Revision 1.35 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Feb 5 03:03:41 2008 UTC (11 years, 9 months ago) by parrello
Branch: MAIN
CVS Tags: rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18
Changes since 1.34: +7 -7 lines
Diff to previous 1.34
Removed obsolete use clauses.

Revision 1.34 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 5 21:12:21 2007 UTC (12 years, 2 months ago) by olson
Branch: MAIN
Changes since 1.33: +5 -1 lines
Diff to previous 1.33
rollup of changes for anno clearinghouse, RAST->SEED import.

Revision 1.33 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 15 21:28:27 2007 UTC (12 years, 3 months ago) by olson
Branch: MAIN
Changes since 1.32: +60 -12 lines
Diff to previous 1.32
Make NMPDR-generated GFF files validate cleanly.

Revision 1.32 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 17 17:59:20 2007 UTC (12 years, 4 months ago) by redwards
Branch: MAIN
Changes since 1.31: +8 -4 lines
Diff to previous 1.31
Adding web_id and using pegs as IDs

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Fri Jun 22 18:44:10 2007 UTC (12 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.30: +28 -5 lines
Diff to previous 1.30
Use batch lookups to attribute server

Revision 1.30 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Mar 7 01:47:06 2007 UTC (12 years, 8 months ago) by redwards
Branch: MAIN
Changes since 1.29: +115 -37 lines
Diff to previous 1.29
changes to gff3 file to be in line with BRC requirements

Revision 1.29 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jan 14 18:31:23 2007 UTC (12 years, 10 months ago) by redwards
Branch: MAIN
Changes since 1.28: +6 -5 lines
Diff to previous 1.28
bug fix to correct sequence coordinates

Revision 1.28 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Dec 6 17:04:13 2006 UTC (12 years, 11 months ago) by redwards
Branch: MAIN
Changes since 1.27: +1 -1 lines
Diff to previous 1.27
corrected evidence code parsing

Revision 1.27 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Dec 6 16:01:55 2006 UTC (12 years, 11 months ago) by redwards
Branch: MAIN
Changes since 1.26: +1 -1 lines
Diff to previous 1.26
releasing gff statistics

Revision 1.26 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Dec 6 15:06:39 2006 UTC (12 years, 11 months ago) by redwards
Branch: MAIN
Changes since 1.25: +2 -2 lines
Diff to previous 1.25
adding annotator to timestamps

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Tue Dec 5 20:07:29 2006 UTC (12 years, 11 months ago) by redwards
Branch: MAIN
Changes since 1.24: +5 -0 lines
Diff to previous 1.24
adding evidence codes

Revision 1.24 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Dec 5 17:58:46 2006 UTC (12 years, 11 months ago) by redwards
Branch: MAIN
Changes since 1.23: +2 -2 lines
Diff to previous 1.23
checking the uri_escapes

Revision 1.23 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Dec 5 16:32:21 2006 UTC (12 years, 11 months ago) by redwards
Branch: MAIN
Changes since 1.22: +26 -8 lines
Diff to previous 1.22
adding assigned and connected timestamps

Revision 1.22 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Dec 5 07:21:02 2006 UTC (12 years, 11 months ago) by redwards
Branch: MAIN
Changes since 1.21: +3 -2 lines
Diff to previous 1.21
missing go terms shouldnot be added

Revision 1.21 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Dec 5 07:04:58 2006 UTC (12 years, 11 months ago) by redwards
Branch: MAIN
Changes since 1.20: +5 -6 lines
Diff to previous 1.20
correcting uri escape

Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Dec 5 05:46:50 2006 UTC (12 years, 11 months ago) by redwards
Branch: MAIN
Changes since 1.19: +38 -42 lines
Diff to previous 1.19
adding GO terms and timestamps

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Oct 2 15:39:30 2006 UTC (13 years, 1 month ago) by redwards
Branch: MAIN
Changes since 1.18: +3 -1 lines
Diff to previous 1.18
correcting link parsing

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Sep 7 03:25:25 2006 UTC (13 years, 2 months ago) by redwards
Branch: MAIN
Changes since 1.17: +20 -5 lines
Diff to previous 1.17
adding genes and locus tags and whatnot

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Jul 1 21:16:10 2006 UTC (13 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.16: +2 -1 lines
Diff to previous 1.16
RAE: Adding harvard clone link info

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Jul 1 18:22:52 2006 UTC (13 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.15: +52 -9 lines
Diff to previous 1.15
RAE: Converting links to Dbxrefs

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Jul 1 03:49:06 2006 UTC (13 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.14: +2 -0 lines
Diff to previous 1.14
RAE: Adding hypothetical protein for non-existant functions

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Jul 1 02:44:47 2006 UTC (13 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.13: +12 -1 lines
Diff to previous 1.13
RAE: Adding ec number for data release

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Feb 2 05:15:03 2006 UTC (13 years, 9 months ago) by overbeek
Branch: MAIN
CVS Tags: caBIG-05Apr06-00, caBIG-13Feb06-00
Changes since 1.12: +21 -7 lines
Diff to previous 1.12
RAE: Changes to gff3 files for NMPDR and adding nmpdr2gff for creating the files

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 5 18:56:38 2005 UTC (13 years, 11 months ago) by olson
Branch: MAIN
Changes since 1.11: +17 -0 lines
Diff to previous 1.11
Add license words.

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Oct 6 16:30:06 2005 UTC (14 years, 1 month ago) by overbeek
Branch: MAIN
CVS Tags: caBIG-00-00-00
Changes since 1.10: +35 -28 lines
Diff to previous 1.10
Adding nmpdr options

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Sep 10 19:04:26 2005 UTC (14 years, 2 months ago) by overbeek
Branch: MAIN
CVS Tags: caBIG-dataload-0
Changes since 1.9: +2 -4 lines
Diff to previous 1.9
Updating seed2gff.pl to validate against IOWG

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Sep 10 18:48:41 2005 UTC (14 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.8: +4 -1 lines
Diff to previous 1.8
Updating seed2gff.pl to validate against IOWG

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Sep 10 18:38:47 2005 UTC (14 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.7: +20 -5 lines
Diff to previous 1.7
Updating seed2gff.pl to validate against IOWG

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Aug 16 15:35:33 2005 UTC (14 years, 3 months ago) by redwards
Branch: MAIN
Changes since 1.6: +2 -0 lines
Diff to previous 1.6
Updating seed2gff and gff2seed for round-robins

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Aug 16 15:03:28 2005 UTC (14 years, 3 months ago) by redwards
Branch: MAIN
Changes since 1.5: +1 -0 lines
Diff to previous 1.5
changing fasta case

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 3 22:39:38 2005 UTC (14 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.4: +11 -21 lines
Diff to previous 1.4
making better seed2gff

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 3 22:10:34 2005 UTC (14 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.3: +9 -31 lines
Diff to previous 1.3
making better seed2gff

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Aug 3 21:47:55 2005 UTC (14 years, 3 months ago) by overbeek
Branch: MAIN
Changes since 1.2: +20 -8 lines
Diff to previous 1.2
Correcting seed2gff<->gff2seed

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jan 4 23:42:58 2005 UTC (14 years, 10 months ago) by redwards
Branch: MAIN
CVS Tags: Root-bobdev_news, efrank-preMakefileToStandardMk, merge-bobdev_news-1, merge-bobdev_news-2, merge-bodev_news-3, merge-trunktag-bobdev_news-1, merge-trunktag-bobdev_news-2, merge-trunktag-bodev_news-3
Branch point for: Branch-bobdev_news
Changes since 1.1: +106 -13 lines
Diff to previous 1.1
Changes to seed2gff to conform to TIGRs GFF3 suggested output

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jan 3 05:24:56 2005 UTC (14 years, 10 months ago) by redwards
Branch: MAIN
Initial add of seed2gff.pl converter for output of gff3 format files

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