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Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 12 18:29:31 2008 UTC (11 years ago) by dejongh
Branch: MAIN
CVS Tags: HEAD, mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912
Changes since 1.16: +2 -2 lines
Diff to previous 1.16
switch to scenario_directory

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 31 14:59:13 2007 UTC (12 years, 3 months ago) by formsma
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, rast_2008_0924, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_release_2008_09_29
Changes since 1.15: +5 -1 lines
Diff to previous 1.15
Added timestamp in GMT to the readme that is generated - Kevin

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 27 20:06:50 2007 UTC (12 years, 3 months ago) by formsma
Branch: MAIN
Changes since 1.14: +1 -2 lines
Diff to previous 1.14
Removed info_inputs.txt from tar. Not generated anymore - Kevin

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 27 18:55:53 2007 UTC (12 years, 3 months ago) by formsma
Branch: MAIN
Changes since 1.13: +2 -1 lines
Diff to previous 1.13
Updated readme about the ATPSYN reaction we've manually added to all models - Kevin

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 27 02:50:53 2007 UTC (12 years, 3 months ago) by mkubal
Branch: MAIN
Changes since 1.12: +32 -34 lines
Diff to previous 1.12
edits

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jul 26 22:01:16 2007 UTC (12 years, 3 months ago) by mkubal
Branch: MAIN
Changes since 1.11: +13 -12 lines
Diff to previous 1.11
edits

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jul 26 14:36:50 2007 UTC (12 years, 3 months ago) by formsma
Branch: MAIN
Changes since 1.10: +4 -2 lines
Diff to previous 1.10
Added flux.output, the raw output from glpsol to the tarbal and modified readme accordingly - Kevin

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jul 25 21:08:32 2007 UTC (12 years, 3 months ago) by mkubal
Branch: MAIN
Changes since 1.9: +10 -6 lines
Diff to previous 1.9
update to readme.txt

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 24 20:07:45 2007 UTC (12 years, 3 months ago) by formsma
Branch: MAIN
Changes since 1.8: +1 -1 lines
Diff to previous 1.8
Updated tarbal to name 'model_files.tgz' - Kevin

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 24 20:04:23 2007 UTC (12 years, 3 months ago) by formsma
Branch: MAIN
Changes since 1.7: +7 -3 lines
Diff to previous 1.7
Updates to readme generation. Added glpsolv link. Clarified statistics - Kevin

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 24 16:52:15 2007 UTC (12 years, 3 months ago) by formsma
Branch: MAIN
Changes since 1.6: +70 -20 lines
Diff to previous 1.6
Updated readme text to be more informative and organized - Kevin

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 23 20:37:00 2007 UTC (12 years, 3 months ago) by formsma
Branch: MAIN
Changes since 1.5: +7 -7 lines
Diff to previous 1.5
Changed tar file name to model-info.tgz and fixed errors involving incorrect file calls when running on RAST - Kevin

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 23 15:53:52 2007 UTC (12 years, 3 months ago) by formsma
Branch: MAIN
Changes since 1.4: +4 -2 lines
Diff to previous 1.4
Updated tar file to be compressed and include model files per Daniel's request - Kevin

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 20 21:18:21 2007 UTC (12 years, 3 months ago) by formsma
Branch: MAIN
Changes since 1.3: +9 -4 lines
Diff to previous 1.3
Added error checks to avoid division by zero. Added support for run_flux_optimization, updated readme text and added that output to the tarball generated - Kevin

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 20 15:06:46 2007 UTC (12 years, 3 months ago) by formsma
Branch: MAIN
Changes since 1.2: +21 -13 lines
Diff to previous 1.2
Updated filehandles for use on RAST. Now creates a FIGV with orgdir if present, and passes
orgdir to all other scripts called. - Kevin

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 17 18:02:06 2007 UTC (12 years, 4 months ago) by formsma
Branch: MAIN
Changes since 1.1: +24 -10 lines
Diff to previous 1.1
Changed argument code to match how it will be called in rp_scenarios.pl for RAST server - Kevin

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jul 17 16:05:02 2007 UTC (12 years, 4 months ago) by formsma
Branch: MAIN
Inital revision of wrapper script for RAST pipeline to generate models for a submitted genome automatically - Kevin

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