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Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Mar 25 16:18:16 2010 UTC (9 years, 7 months ago) by parrello
Branch: MAIN
CVS Tags: HEAD, mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912
Changes since 1.13: +6 -2 lines
Diff to previous 1.13
Added "-verbose" option so tracing can be turned on from the servers.

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 12 14:26:20 2009 UTC (10 years ago) by gdpusch
Branch: MAIN
CVS Tags: rast_rel_2010_0118
Changes since 1.12: +4 -0 lines
Diff to previous 1.12
Explicitly initialize %start_counts to quasi-gracefully handle case of no training STARTs found.

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Apr 14 18:19:17 2009 UTC (10 years, 7 months ago) by gdpusch
Branch: MAIN
CVS Tags: rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925
Changes since 1.11: +10 -4 lines
Diff to previous 1.11
Hopefully fixed the "long-orfs failure on short-contigs" bug.

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Apr 14 17:51:40 2009 UTC (10 years, 7 months ago) by gdpusch
Branch: MAIN
Changes since 1.10: +27 -8 lines
Diff to previous 1.10
Hopefully fixed the "long-orfs failure on short-contigs" bug.

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Nov 24 13:17:38 2008 UTC (10 years, 11 months ago) by gdpusch
Branch: MAIN
CVS Tags: rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26
Changes since 1.9: +13 -3 lines
Diff to previous 1.9
Skip too-short contigs during auto-training; added "-help" arg.

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 10 22:19:38 2008 UTC (11 years, 2 months ago) by gdpusch
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, rast_2008_0924, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_release_2008_09_29
Changes since 1.8: +1 -1 lines
Diff to previous 1.8
Fixed neglected linear topology swicth. -- /gdp

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 9 22:56:16 2008 UTC (11 years, 2 months ago) by gdpusch
Branch: MAIN
Changes since 1.7: +2 -2 lines
Diff to previous 1.7
Added genetic-code switch to invocation of `glimmer3`. -- /gdp

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Sep 8 01:01:18 2008 UTC (11 years, 2 months ago) by gdpusch
Branch: MAIN
Changes since 1.6: +12 -5 lines
Diff to previous 1.6
Fixed botched contigs_file name during invocation of `glimmer3`. -- /gdp

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Sep 7 23:38:45 2008 UTC (11 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.5: +2 -5 lines
Diff to previous 1.5
process arguments to allow the optional arguments to occur anywhere

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Sep 7 23:23:31 2008 UTC (11 years, 2 months ago) by overbeek
Branch: MAIN
Changes since 1.4: +10 -9 lines
Diff to previous 1.4
process arguments to allow the optional arguments to occur anywhere

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Sep 4 17:46:10 2008 UTC (11 years, 2 months ago) by gdpusch
Branch: MAIN
Changes since 1.3: +43 -9 lines
Diff to previous 1.3
Fixes to get PATH and PWM matrix stuff straightened out. -- /gdp

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jul 17 05:02:05 2008 UTC (11 years, 3 months ago) by gdpusch
Branch: MAIN
CVS Tags: mgrast_rel_2008_0806, rast_rel_2008_07_21, rast_rel_2008_08_07
Changes since 1.2: +35 -31 lines
Diff to previous 1.2
Set paths to GLIMMER-3 and ELP from enviroment variables. -- /gdp

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jul 16 21:59:37 2008 UTC (11 years, 3 months ago) by gdpusch
Branch: MAIN
Changes since 1.1: +353 -178 lines
Diff to previous 1.1
Near-complete re-write to correct initial misconception that GLIMMER v.3 was (almost) backward-compatible with v.2. -- /gdp

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Tue May 30 21:06:24 2006 UTC (13 years, 5 months ago) by overbeek
Branch: MAIN
CVS Tags: rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18
Initial check-in. -- /gdp

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