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revision 1.11, Tue Apr 14 17:51:40 2009 UTC revision 1.12, Tue Apr 14 18:19:17 2009 UTC
# Line 189  Line 189 
189              $longorfs_err = &FIG::file_read($tmp_longorfs_err);              $longorfs_err = &FIG::file_read($tmp_longorfs_err);
190              print STDERR $longorfs_err if $ENV{VERBOSE};              print STDERR $longorfs_err if $ENV{VERBOSE};
191          }          }
192          if ($rc && $longorfs_err) {  
193            if ($rc) {
194                if ($longorfs_err) {
195              if ($longorfs_err =~ m/WHAT: ERROR:  No valid orfs found below entropy cutoff/so) {              if ($longorfs_err =~ m/WHAT: ERROR:  No valid orfs found below entropy cutoff/so) {
196                  #...Error is harmless --- ignore it                  #...Error is harmless --- ignore it
197              }              }
198              else {              else {
199                  die "Could not extract training ORFs from contig $contig_id";                      die (qq(Could not extract training ORFs from contig $contig_id --- return-code $rc:\n), $longorfs_err);
200                    }
201                }
202                else {
203                    die qq(Could not extract training ORFs from contig $contig_id --- return-code $rc);
204              }              }
205          }          }
206    

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