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revision 1.2, Mon Apr 13 14:35:06 2009 UTC revision 1.3, Tue Apr 14 00:07:03 2009 UTC
# Line 19  Line 19 
19  &FIG::run("make_scored_instances $dir/genomes $dir/Instances $dir/ScoredAlignments $dir/contigs $dir/HTML");  &FIG::run("make_scored_instances $dir/genomes $dir/Instances $dir/ScoredAlignments $dir/contigs $dir/HTML");
20  &FIG::run("get_rna_features_for_calling_genes $dir/genomes $dir/Instances");  &FIG::run("get_rna_features_for_calling_genes $dir/genomes $dir/Instances");
21  &FIG::run("generate_picked $dir/Instances $dir/Picked");  &FIG::run("generate_picked $dir/Instances $dir/Picked");
22  &FIG::run("mark_picked_genes genomes $dir/ScoredAlignments $dir/Picked $dir/HTML");  &FIG::run("mark_picked_genes $dir/genomes $dir/ScoredAlignments $dir/Picked $dir/HTML");
23  &FIG::run("generate_comparisons $dir/genomes ../HTML $dir/Picked $dir/Comparisons");  &FIG::run("generate_comparisons $dir/genomes ../HTML $dir/Picked $dir/Comparisons");

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