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Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 29 19:21:54 2010 UTC (9 years, 6 months ago) by overbeek
Branch: MAIN
CVS Tags: mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928
Changes since 1.5: +79 -143 lines
Diff to previous 1.5
keep representative_sequences, but make it a shadow of the new svr_representative_sequences.pl

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 29 15:33:38 2010 UTC (9 years, 6 months ago) by fangfang
Branch: MAIN
Changes since 1.4: +35 -0 lines
Diff to previous 1.4
Added -g option for genome IDs to keep.

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Sat May 12 20:47:03 2007 UTC (12 years, 10 months ago) by golsen
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, rast_2008_0924, rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_release_2008_09_29
Changes since 1.3: +5 -1 lines
Diff to previous 1.3
Modifications to control ordering of sequences in representative sets and
in sequeneces added to an alignment.  Also new options to silently remove
sequences with duplicate ids.

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Mar 19 18:58:10 2007 UTC (13 years ago) by golsen
Branch: MAIN
Changes since 1.2: +27 -3 lines
Diff to previous 1.2
Change in the representative sequences algorithm.  This could still use
more work.

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Feb 16 17:41:34 2007 UTC (13 years, 1 month ago) by golsen
Branch: MAIN
Changes since 1.1: +108 -29 lines
Diff to previous 1.1
Major improvement in representative_sequences.pl.  Greatly improved
comments in representative_sequences.pm.

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Dec 20 23:08:17 2006 UTC (13 years, 3 months ago) by overbeek
Branch: MAIN
add representative_sequences

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