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Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 24 15:54:16 2015 UTC (3 years, 10 months ago) by gdpusch
Branch: MAIN
CVS Tags: HEAD
Changes since 1.10: +1 -1 lines
Diff to previous 1.10
Add test to flip to "metagenome" mode for genomes smaller than 25 kbp, so that PRODIGAL will not bail out.FigKernelPackages/Prodigal.pm

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 11 04:21:13 2008 UTC (11 years, 5 months ago) by gdpusch
Branch: MAIN
CVS Tags: mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_2008_0924, rast_rel_2008_06_16, rast_rel_2008_06_18, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912, rast_release_2008_09_29
Changes since 1.9: +1 -0 lines
Diff to previous 1.9
Added setting of VERBOSE from metafile. -- /gdp

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jun 6 18:00:31 2008 UTC (11 years, 5 months ago) by gdpusch
Branch: MAIN
Changes since 1.8: +24 -6 lines
Diff to previous 1.8
Replaced OOP invocation of FIG::display_id_and_seq() due to Bruce\'s unilateral and undiscussed synatax change; cleaned up a few typos in the debugging msgs. -- /gdp

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 25 01:34:40 2007 UTC (12 years, 1 month ago) by gdpusch
Branch: MAIN
CVS Tags: rast_rel_2008_04_23
Changes since 1.7: +7 -12 lines
Diff to previous 1.7
Fixed handling of "split" locations. -- /gdp

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Fri May 25 22:38:38 2007 UTC (12 years, 6 months ago) by gdpusch
Branch: MAIN
Changes since 1.6: +57 -15 lines
Diff to previous 1.6
Added support for alternate genetic codes. -- /gdp

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 4 23:13:40 2006 UTC (12 years, 11 months ago) by overbeek
Branch: MAIN
Changes since 1.5: +12 -14 lines
Diff to previous 1.5
Fixed serious sorting bug introduced by spurious "my". -- /gdp

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Dec 4 21:15:37 2006 UTC (12 years, 11 months ago) by olson
Branch: MAIN
Changes since 1.4: +15 -12 lines
Diff to previous 1.4
48-hr updates.

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 30 23:04:16 2006 UTC (12 years, 11 months ago) by overbeek
Branch: MAIN
Changes since 1.3: +20 -1 lines
Diff to previous 1.3
put in the fr2go stuff

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Nov 3 17:59:13 2006 UTC (13 years ago) by overbeek
Branch: MAIN
Changes since 1.2: +23 -13 lines
Diff to previous 1.2
Removed several stupid bugs. -- /gdp

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Oct 23 17:08:58 2006 UTC (13 years, 1 month ago) by overbeek
Branch: MAIN
Changes since 1.1: +4 -0 lines
Diff to previous 1.1
Added code to overwrite tbl, recompute fasta

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Oct 23 15:00:03 2006 UTC (13 years, 1 month ago) by overbeek
Branch: MAIN
Script to filter tbls against RNA overlaps. -- /gdp

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