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Revision 1.2 - (download) (as text) (annotate)
Mon Dec 5 18:56:38 2005 UTC (14 years, 6 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, myrast_rel40, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, rast_rel_2008_04_23, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, caBIG-05Apr06-00, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, caBIG-13Feb06-00, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
Changes since 1.1: +17 -0 lines
Add license words.

# Copyright (c) 2003-2006 University of Chicago and Fellowship
# for Interpretations of Genomes. All Rights Reserved.
# This file is part of the SEED Toolkit.
# The SEED Toolkit is free software. You can redistribute
# it and/or modify it under the terms of the SEED Toolkit
# Public License. 
# You should have received a copy of the SEED Toolkit Public License
# along with this program; if not write to the University of Chicago
# at info@ci.uchicago.edu or the Fellowship for Interpretation of
# Genomes at veronika@thefig.info or download a copy from
# http://www.theseed.org/LICENSE.TXT.

use SOAP::Lite;
use strict;

my $usage = "register_features_with_clearinghouse genome_id type num_features\n";

my $service_url = "http://clearinghouse.theseed.org/Clearinghouse/clearinghouse_services.cgi";

my $proxy = SOAP::Lite-> uri('http://www.soaplite.com/Scripts') -> proxy($service_url);

if (@ARGV != 3)
    die $usage;

my $genome = shift;
my $type = shift;
my $n_features = shift;

my @valid_types = qw(peg pp rna pi);
my %valid_types;
map { $valid_types{$_}++ } @valid_types;

if (!$valid_types{$type})
    die "Type '$type' should be one of @valid_types\n";

if ($genome !~ /^\d+\.\d+$/)
    die "Invalid genome id '$genome'\n";

if ($n_features !~ /^\d+$/ or $n_features <= 0)
    die "Number of features '$n_features' needs to be a positive number\n";

# Everything validated.

my $response = $proxy->register_feature($genome, $type, $n_features);

if ($response->fault)
    die "Failed to register: ", $response->faultcode, " ", $response->faultstring, "\n";

my $start = $response->result;
my $end = $start + $n_features - 1;

print "$start\t$end\n";

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