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1 : overbeek 1.1 # -*- perl -*-
2 :     #
3 :     # Copyright (c) 2003-2006 University of Chicago and Fellowship
4 :     # for Interpretations of Genomes. All Rights Reserved.
5 :     #
6 :     # This file is part of the SEED Toolkit.
7 :     #
8 :     # The SEED Toolkit is free software. You can redistribute
9 :     # it and/or modify it under the terms of the SEED Toolkit
10 :     # Public License.
11 :     #
12 :     # You should have received a copy of the SEED Toolkit Public License
13 :     # along with this program; if not write to the University of Chicago
14 :     # at info@ci.uchicago.edu or the Fellowship for Interpretation of
15 :     # Genomes at veronika@thefig.info or download a copy from
16 :     # http://www.theseed.org/LICENSE.TXT.
17 :     #
18 :    
19 :    
20 :     ###########################################
21 :     use FIG;
22 :     my $fig = new FIG;
23 :    
24 :     my($cluster);
25 :     foreach $cluster (`cut -f1,2 < $FIG_Config::data/CouplingData/scores | cluster_objects`)
26 :     {
27 :     chop $cluster;
28 :     my @cluster = split(/\s+/,$cluster);
29 :     if (@cluster > 1)
30 :     {
31 :     $fig->add_chromosomal_cluster(\@cluster);
32 :     }
33 :     }
34 :     $fig->export_set("chromosomal_clusters","cluster_id","$FIG_Config::global/chromosomal_clusters");
35 :     &FIG::run("load_sets chromosomal_clusters cluster_id $FIG_Config::global/chromosomal_clusters");
36 :    

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