[Bio] / FigKernelScripts / rapid_subsystem_inference.pl Repository:
ViewVC logotype

Log of /FigKernelScripts/rapid_subsystem_inference.pl

Parent Directory Parent Directory


Links to HEAD: (view) (download) (as text) (annotate)
Sticky Tag:

Revision 1.22 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 24 19:00:50 2015 UTC (4 years, 4 months ago) by overbeek
Branch: MAIN
CVS Tags: HEAD
Changes since 1.21: +0 -15 lines
Diff to previous 1.21
fix duplicate code

Revision 1.21 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jul 24 17:56:24 2015 UTC (4 years, 4 months ago) by overbeek
Branch: MAIN
Changes since 1.20: +1 -1 lines
Diff to previous 1.20
fix duplicates

Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Jun 25 18:15:01 2014 UTC (5 years, 5 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2014_0729, rast_rel_2014_0912
Changes since 1.19: +3 -1 lines
Diff to previous 1.19
Fix memory leak.

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 21 16:48:31 2011 UTC (8 years, 5 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_rel40, rast_rel_2011_0928
Changes since 1.18: +2 -2 lines
Diff to previous 1.18
Remove debug.

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jun 21 16:47:45 2011 UTC (8 years, 5 months ago) by olson
Branch: MAIN
Changes since 1.17: +10 -6 lines
Diff to previous 1.17
Fixes to bring original and fast-batch subsystem inference tools into alignment.

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Aug 23 21:28:16 2010 UTC (9 years, 3 months ago) by redwards
Branch: MAIN
CVS Tags: mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, myrast_33, rast_rel_2010_0827, rast_rel_2010_0928, rast_rel_2010_1206, rast_rel_2011_0119
Changes since 1.16: +3 -1 lines
Diff to previous 1.16
removing zero length keys

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jun 13 01:52:57 2010 UTC (9 years, 6 months ago) by overbeek
Branch: MAIN
Changes since 1.15: +20 -0 lines
Diff to previous 1.15
keep only last assignment in assignment file

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jan 25 17:47:41 2009 UTC (10 years, 10 months ago) by olson
Branch: MAIN
CVS Tags: rast_rel_2009_02_05, rast_rel_2009_03_26, rast_rel_2009_05_18, rast_rel_2009_07_09, rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526
Changes since 1.14: +1 -5 lines
Diff to previous 1.14
revert changes

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jan 25 17:34:13 2009 UTC (10 years, 10 months ago) by overbeek
Branch: MAIN
Changes since 1.13: +5 -1 lines
Diff to previous 1.13
make ex_assertions.cgi ignore inactive variants

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jul 7 18:43:49 2008 UTC (11 years, 5 months ago) by overbeek
Branch: MAIN
CVS Tags: mgrast_rel_2008_0625, mgrast_rel_2008_0806, mgrast_rel_2008_0917, mgrast_rel_2008_0919, mgrast_rel_2008_0923, mgrast_rel_2008_0924, mgrast_rel_2008_1110, mgrast_rel_2008_1110_v2, rast_2008_0924, rast_rel_2008_07_21, rast_rel_2008_08_07, rast_rel_2008_09_29, rast_rel_2008_09_30, rast_rel_2008_10_09, rast_rel_2008_10_29, rast_rel_2008_11_24, rast_rel_2008_12_18, rast_release_2008_09_29
Changes since 1.12: +13 -1 lines
Diff to previous 1.12
fixes to inference of -1 variants

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Jun 28 20:56:11 2008 UTC (11 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.11: +2 -2 lines
Diff to previous 1.11
add table of code meanings to get_dlits.cgi

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Jun 23 01:47:40 2008 UTC (11 years, 5 months ago) by overbeek
Branch: MAIN
Changes since 1.10: +6 -0 lines
Diff to previous 1.10
handle screwed up subsystems

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Mar 13 14:21:43 2008 UTC (11 years, 9 months ago) by overbeek
Branch: MAIN
CVS Tags: rast_rel_2008_04_23, rast_rel_2008_06_16, rast_rel_2008_06_18
Changes since 1.9: +9 -10 lines
Diff to previous 1.9
fixes to determination of variant codes

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Feb 20 17:14:31 2008 UTC (11 years, 9 months ago) by overbeek
Branch: MAIN
Changes since 1.8: +7 -3 lines
Diff to previous 1.8
fix to inference of subsystems

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Sep 11 22:24:51 2007 UTC (12 years, 3 months ago) by olson
Branch: MAIN
Changes since 1.7: +4 -0 lines
Diff to previous 1.7
fix evlogfh bug

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 5 21:12:21 2007 UTC (12 years, 3 months ago) by olson
Branch: MAIN
Changes since 1.6: +60 -8 lines
Diff to previous 1.6
rollup of changes for anno clearinghouse, RAST->SEED import.

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Apr 10 20:40:46 2007 UTC (12 years, 8 months ago) by overbeek
Branch: MAIN
Changes since 1.5: +29 -1 lines
Diff to previous 1.5
infer subsystems when you have supersets of existing variants

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jan 18 03:08:57 2007 UTC (12 years, 10 months ago) by overbeek
Branch: MAIN
Changes since 1.4: +5 -2 lines
Diff to previous 1.4
add comments to functions

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Nov 29 15:19:19 2006 UTC (13 years ago) by olson
Branch: MAIN
Changes since 1.3: +10 -5 lines
Diff to previous 1.3
Rollup commit of 48hr changes.

Added add_virtual_genome to Subsystem.pm to support UnvSubsys doing
the right thing when handed a FIGV.

Added propagation of 48hr_job thru the various link generation scripts in order for protein.cgi/display_subsys.cgi
to properly show virtual genomes.

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Nov 25 17:17:47 2006 UTC (13 years ago) by overbeek
Branch: MAIN
Changes since 1.2: +2 -5 lines
Diff to previous 1.2
allow multiple function files in rapid propogation

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Nov 14 18:20:29 2006 UTC (13 years, 1 month ago) by overbeek
Branch: MAIN
Changes since 1.1: +1 -1 lines
Diff to previous 1.1
propagate -1 variant codes

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Oct 15 13:28:00 2006 UTC (13 years, 1 month ago) by overbeek
Branch: MAIN
commit rapid_subsystem_inference

This form allows you to request diffs between any two revisions of this file. For each of the two "sides" of the diff, select a symbolic revision name using the selection box, or choose 'Use Text Field' and enter a numeric revision.

  Diffs between and
  Type of Diff should be a

Sort log by:

MCS Webmaster
ViewVC Help
Powered by ViewVC 1.0.3