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Revision 1.22 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Nov 11 17:32:17 2010 UTC (9 years ago) by disz
Branch: MAIN
CVS Tags: HEAD, mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_dev_08022011, mgrast_dev_08112011, mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, mgrast_release_3_1_1, mgrast_release_3_1_2, mgrast_version_3_2, myrast_33, myrast_rel40, rast_rel_2010_1206, rast_rel_2011_0119, rast_rel_2011_0928, rast_rel_2014_0729, rast_rel_2014_0912
Changes since 1.21: +2 -2 lines
Diff to previous 1.21
FigFam 6 digit problem

Revision 1.21 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Sep 2 13:40:17 2009 UTC (10 years, 2 months ago) by gdpusch
Branch: MAIN
CVS Tags: rast_rel_2009_0925, rast_rel_2010_0118, rast_rel_2010_0526, rast_rel_2010_0827, rast_rel_2010_0928
Changes since 1.20: +47 -16 lines
Diff to previous 1.20
Added more bulletproofing, plus fallback to MGA if GLIMMER fails

Revision 1.20 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Aug 20 15:56:53 2009 UTC (10 years, 3 months ago) by arodri7
Branch: MAIN
Changes since 1.19: +2 -2 lines
Diff to previous 1.19
changed subsystem running

Revision 1.19 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Aug 18 22:27:50 2009 UTC (10 years, 3 months ago) by gdpusch
Branch: MAIN
Changes since 1.18: +1 -1 lines
Diff to previous 1.18
Fixed capitolization of "Circular" topology test.

Revision 1.18 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 11 19:28:33 2009 UTC (10 years, 5 months ago) by arodri7
Branch: MAIN
CVS Tags: rast_rel_2009_07_09
Changes since 1.17: +11 -11 lines
Diff to previous 1.17
corrected linear topology problem

Revision 1.17 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 11 18:31:08 2009 UTC (10 years, 5 months ago) by gdpusch
Branch: MAIN
Changes since 1.16: +56 -34 lines
Diff to previous 1.16
Fixed problems with "found" and "called_by" files; deferred subsystem analysis until after auto-assign.

Revision 1.16 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jun 5 15:17:55 2009 UTC (10 years, 5 months ago) by gdpusch
Branch: MAIN
Changes since 1.15: +1 -1 lines
Diff to previous 1.15
Fixed typo in filename $tmpD/double_contig

Revision 1.15 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Apr 16 22:44:00 2009 UTC (10 years, 7 months ago) by arodri7
Branch: MAIN
CVS Tags: rast_rel_2009_05_18
Changes since 1.14: +84 -33 lines
Diff to previous 1.14
added glimmer and circular topoplogy check in pipeline

Revision 1.14 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Apr 6 20:41:46 2009 UTC (10 years, 7 months ago) by arodri7
Branch: MAIN
Changes since 1.13: +101 -0 lines
Diff to previous 1.13
added RNA computation to rapid_propagation_plasmid

Revision 1.13 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Mar 23 13:26:24 2009 UTC (10 years, 7 months ago) by arodri7
Branch: MAIN
Changes since 1.12: +2 -2 lines
Diff to previous 1.12
added fam to the found output

Revision 1.12 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Mar 17 20:40:46 2009 UTC (10 years, 8 months ago) by arodri7
Branch: MAIN
Changes since 1.11: +1 -1 lines
Diff to previous 1.11
*** empty log message ***

Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Mar 17 20:01:12 2009 UTC (10 years, 8 months ago) by arodri7
Branch: MAIN
Changes since 1.10: +1 -0 lines
Diff to previous 1.10
*** empty log message ***

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Mar 17 17:44:24 2009 UTC (10 years, 8 months ago) by arodri7
Branch: MAIN
Changes since 1.9: +4 -2 lines
Diff to previous 1.9
*** empty log message ***

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Mar 16 16:41:46 2009 UTC (10 years, 8 months ago) by arodri7
Branch: MAIN
CVS Tags: rast_rel_2009_03_26
Changes since 1.8: +5 -5 lines
Diff to previous 1.8
*** empty log message ***

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Mar 16 14:41:22 2009 UTC (10 years, 8 months ago) by arodri7
Branch: MAIN
Changes since 1.7: +1 -1 lines
Diff to previous 1.7
re-added renumber

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Mar 16 14:39:31 2009 UTC (10 years, 8 months ago) by arodri7
Branch: MAIN
Changes since 1.6: +12 -5 lines
Diff to previous 1.6
re-added renumber

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Mon Mar 16 14:01:45 2009 UTC (10 years, 8 months ago) by arodri7
Branch: MAIN
Changes since 1.5: +2 -2 lines
Diff to previous 1.5
eliminate runumbering for now. Don't need it now in plasmids

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Mar 15 16:11:27 2009 UTC (10 years, 8 months ago) by arodri7
Branch: MAIN
Changes since 1.4: +3 -3 lines
Diff to previous 1.4
added steps to rapid_propagation_plasmid

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Sat Mar 14 15:27:04 2009 UTC (10 years, 8 months ago) by arodri7
Branch: MAIN
Changes since 1.3: +10 -5 lines
Diff to previous 1.3
revised errors

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Mar 12 21:28:49 2009 UTC (10 years, 8 months ago) by olson
Branch: MAIN
Changes since 1.2: +2 -2 lines
Diff to previous 1.2
fix missing quotes

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Mar 10 18:39:09 2009 UTC (10 years, 8 months ago) by arodri7
Branch: MAIN
Changes since 1.1: +12 -2 lines
Diff to previous 1.1
updates to rapid_propagation_plasmid

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Mar 6 16:13:19 2009 UTC (10 years, 8 months ago) by arodri7
Branch: MAIN
rapid_propagation_plasmid for fragments and plasmids. Runs metagene and scans the output sequences through FIGfams

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