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Revision 1.11 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jan 6 06:53:01 2017 UTC (2 years, 10 months ago) by gdpusch
Branch: MAIN
CVS Tags: HEAD
Changes since 1.10: +1 -1 lines
Diff to previous 1.10
Finally fixed (I hope!) the "Undefined Domain" bug.

Revision 1.10 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 24 15:54:16 2015 UTC (3 years, 10 months ago) by gdpusch
Branch: MAIN
Changes since 1.9: +21 -3 lines
Diff to previous 1.9
Add test to flip to "metagenome" mode for genomes smaller than 25 kbp, so that PRODIGAL will not bail out.FigKernelPackages/Prodigal.pm

Revision 1.9 - (view) (download) (as text) (annotate) - [select for diffs]
Wed Oct 5 19:13:44 2011 UTC (8 years, 1 month ago) by gdpusch
Branch: MAIN
CVS Tags: mgrast_dev_10262011, mgrast_dev_12152011, mgrast_release_3_1_2, mgrast_version_3_2, rast_rel_2014_0729, rast_rel_2014_0912
Changes since 1.8: +9 -3 lines
Diff to previous 1.8
Fixed stupid bug in "keep_genecalls" mode.

Revision 1.8 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Jun 30 13:10:02 2011 UTC (8 years, 4 months ago) by gdpusch
Branch: MAIN
CVS Tags: mgrast_dev_08022011, mgrast_dev_08112011, mgrast_release_3_1_1, rast_rel_2011_0928
Changes since 1.7: +10 -7 lines
Diff to previous 1.7
Added fix to fail gracefully from `find_app_neigh`.

Revision 1.7 - (view) (download) (as text) (annotate) - [select for diffs]
Fri Jan 21 14:57:40 2011 UTC (8 years, 9 months ago) by gdpusch
Branch: MAIN
CVS Tags: mgrast_dev_02212011, mgrast_dev_02222011, mgrast_dev_03252011, mgrast_dev_03312011, mgrast_dev_04012011, mgrast_dev_04052011, mgrast_dev_04082011, mgrast_dev_04132011, mgrast_dev_05262011, mgrast_dev_06072011, mgrast_release_3_0, mgrast_release_3_0_1, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_4, mgrast_release_3_1_0, myrast_33, myrast_rel40
Changes since 1.6: +39 -14 lines
Diff to previous 1.6
Fixed problem with virus/plasmid branch in "keep_genecalls" mode.

Revision 1.6 - (view) (download) (as text) (annotate) - [select for diffs]
Tue Jan 18 11:30:00 2011 UTC (8 years, 10 months ago) by gdpusch
Branch: MAIN
CVS Tags: rast_rel_2011_0119
Changes since 1.5: +11 -10 lines
Diff to previous 1.5
Invoke correct_frameshifts with "-nofatal" option.

Revision 1.5 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jan 16 19:48:50 2011 UTC (8 years, 10 months ago) by gdpusch
Branch: MAIN
Changes since 1.4: +1 -1 lines
Diff to previous 1.4
Fixed bug that wrote to "orgdir/proposed_functions" instead of "orgdir/assigned_functions."

Revision 1.4 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jan 16 19:03:36 2011 UTC (8 years, 10 months ago) by gdpusch
Branch: MAIN
Changes since 1.3: +2 -2 lines
Diff to previous 1.3
Fixed bug that wrote to "orgdir/proposed_functions" instead of "orgdir/assigned_functions."

Revision 1.3 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Jan 16 18:30:12 2011 UTC (8 years, 10 months ago) by gdpusch
Branch: MAIN
Changes since 1.2: +2 -2 lines
Diff to previous 1.2
Fixed bugs introduced by change to ANNOserver::find_genes_based_on_kmers() and botched small-genome branch invocation of subroutine "correct_frameshifts()."

Revision 1.2 - (view) (download) (as text) (annotate) - [select for diffs]
Thu Dec 2 19:53:30 2010 UTC (8 years, 11 months ago) by gdpusch
Branch: MAIN
CVS Tags: rast_rel_2010_1206
Changes since 1.1: +1 -1 lines
Diff to previous 1.1
Corrected typo.

Revision 1.1 - (view) (download) (as text) (annotate) - [select for diffs]
Sun Nov 28 15:45:03 2010 UTC (8 years, 11 months ago) by gdpusch
Branch: MAIN
Initial checkin.

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