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Revision 1.1 - (download) (as text) (annotate)
Thu Aug 27 19:49:15 2009 UTC (10 years, 6 months ago) by parrello
Branch: MAIN
CVS Tags: mgrast_dev_08112011, mgrast_dev_08022011, rast_rel_2014_0912, myrast_rel40, mgrast_dev_05262011, mgrast_dev_04082011, rast_rel_2010_0928, mgrast_version_3_2, mgrast_dev_12152011, mgrast_dev_06072011, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, rast_rel_2011_0119, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, mgrast_dev_04012011, rast_rel_2010_0827, myrast_33, rast_rel_2011_0928, mgrast_dev_04052011, mgrast_dev_02222011, mgrast_dev_10262011, HEAD
New script to find features with publications attached.

#!/usr/bin/perl -w
use strict;

use Sapling;
use Tracer;


# Get the sapling database.
my $sap = Sapling->new();
# Ask for all features with indirect or direct literature evidence.
my $qh = $sap->Get("Feature", 
                   'Feature(evidence-code) LIKE ? OR Feature(evidence-code) LIKE ?',
                   ['ilit%', 'dlit%']);
# Loop through the results, keeping the IDs found.
my %found;
while (my $resultRow = $qh->Fetch()) {
    # Get the next ID.
    my $featureId = $resultRow->PrimaryValue('Feature(id)');
    # Store it in the hash.
    $found{$featureId} = 1;
# Now output all of the features found.
for my $fid (sort keys %found) {
    print "$fid\n";


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