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revision 1.10, Thu Sep 13 19:55:02 2007 UTC revision 1.11, Wed Oct 10 20:24:21 2007 UTC
# Line 1  Line 1 
1  # -*- perl -*-  # -*- perl -*-
2  #  ########################################################################
3  # Copyright (c) 2003-2006 University of Chicago and Fellowship  # Copyright (c) 2003-2006 University of Chicago and Fellowship
4  # for Interpretations of Genomes. All Rights Reserved.  # for Interpretations of Genomes. All Rights Reserved.
5  #  #
# Line 14  Line 14 
14  # at info@ci.uchicago.edu or the Fellowship for Interpretation of  # at info@ci.uchicago.edu or the Fellowship for Interpretation of
15  # Genomes at veronika@thefig.info or download a copy from  # Genomes at veronika@thefig.info or download a copy from
16  # http://www.theseed.org/LICENSE.TXT.  # http://www.theseed.org/LICENSE.TXT.
17  #  ########################################################################
18    
19  use strict;  use strict;
20  use FIG;  use FIG;
# Line 110  Line 110 
110  }  }
111    
112  $to_call->promote_remaining_orfs;  $to_call->promote_remaining_orfs;
113  #  
114  # export_features writes assigned_functions  #... export_features also writes assigned_functions
 #  
115  $to_call->export_features;  $to_call->export_features;
116    
117    
118  if (! -s "$to_call_dir/Features/orf/tbl") {  if (! -s "$to_call_dir/Features/orf/tbl") {
     #  
119      # Hrm, weird NFS effects here. There was a failure of this even though the directory      # Hrm, weird NFS effects here. There was a failure of this even though the directory
120      # was indeed empty.      # was indeed empty.
121      if (system("/bin/rm -fRv $to_call_dir/Features/orf")) {      if (system("/bin/rm -fRv $to_call_dir/Features/orf")) {

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