[Bio] / FigKernelScripts / process_one_exp_dir.pl Repository:
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revision 1.1, Fri Jan 14 20:06:05 2011 UTC revision 1.2, Mon Jan 24 18:16:35 2011 UTC
# Line 25  Line 25 
25    
26  my $e = ExpressionDir->create($expr_dir, $genome_id, $fig);  my $e = ExpressionDir->create($expr_dir, $genome_id, $fig);
27    
28    if ($probes =~ /\.sif$/)
29    {
30        $e->compute_rma_normalized_from_sif($cdf, $probes, $experiments);
31    }
32    elsif ($probes =~ /\.tags$/)
33    {
34        $e->compute_rma_normalized_from_locus_tags($cdf, $probes, $experiments);
35    }
36    else
37    {
38  $e->compute_probe_to_peg($probes);  $e->compute_probe_to_peg($probes);
39    
40  $e->compute_rma_normalized($cdf, $experiments);  $e->compute_rma_normalized($cdf, $experiments);
41    }
42    
43  $e->compute_atomic_regulons();  $e->compute_atomic_regulons();

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