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revision 1.4, Sun Jul 24 15:54:40 2005 UTC revision 1.7, Mon Dec 5 18:56:38 2005 UTC
# Line 1  Line 1 
1    # -*- perl -*-
2    #
3    # Copyright (c) 2003-2006 University of Chicago and Fellowship
4    # for Interpretations of Genomes. All Rights Reserved.
5    #
6    # This file is part of the SEED Toolkit.
7    #
8    # The SEED Toolkit is free software. You can redistribute
9    # it and/or modify it under the terms of the SEED Toolkit
10    # Public License.
11    #
12    # You should have received a copy of the SEED Toolkit Public License
13    # along with this program; if not write to the University of Chicago
14    # at info@ci.uchicago.edu or the Fellowship for Interpretation of
15    # Genomes at veronika@thefig.info or download a copy from
16    # http://www.theseed.org/LICENSE.TXT.
17    #
18    
19    
20  use FIG;  use FIG;
21  my $fig = new FIG;  my $fig = new FIG;
# Line 11  Line 29 
29  )  )
30      || die $usage;      || die $usage;
31    
32  &FIG::run("make_calls_for_start_predictions < $objects > /tmp/with.calls.$$");  &FIG::run("make_calls_for_start_predictions < $objects > $FIG_Config::temp/with.calls.$$");
33  &FIG::run("order_corrections_for_start_predictions < /tmp/with.calls.$$ 2> /tmp/clear$$ > /tmp/proposed$$");  &FIG::run("order_corrections_for_start_predictions < $FIG_Config::temp/with.calls.$$ 2> $FIG_Config::temp/clear$$ > $FIG_Config::temp/proposed$$");
34  system "cat /tmp/clear$$ >> $clear_calls";  system "cat $FIG_Config::temp/clear$$ >> $clear_calls";
35  system "cat /tmp/proposed$$ >> $proposed";  system "cat $FIG_Config::temp/proposed$$ >> $proposed";
36  system "cat /tmp/with.calls.$$";  system "cat $FIG_Config::temp/with.calls.$$";
37  unlink("/tmp/with.calls.$$","/tmp/clear$$","/tmp/proposed$$");  unlink("$FIG_Config::temp/with.calls.$$","$FIG_Config::temp/clear$$","$FIG_Config::temp/proposed$$");
38    
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