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Revision 1.2 - (download) (as text) (annotate)
Tue Jul 17 19:40:06 2007 UTC (12 years, 7 months ago) by formsma
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, myrast_rel40, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, rast_rel_2008_04_23, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
Changes since 1.1: +8 -0 lines
Added code to automatically run 'run_scenarios All' if it hasn't been run. These data is required for this script to run - Kevin

# _*_ Perl _*_
# 
# This script will give you a two column table of peg to scenario mappings
# of a given genome. Useful to predict what pegs will be in the metabolic model
# and which scenarios they will be used in.
#
use strict;
use FIG;
use model;
my ($genome_id) = @ARGV;

my $fig = FIG->new();

unless (scalar @ARGV == 1)
{
    print STDERR "usage: predict_scenario <genome_id>\n";
    exit(-1);
}
chomp $genome_id;

#Lets make a check here. If the scenarios haven't been run yet for this genome run them.
if(!opendir(GENO_SCEN, "$FIG_Config::var/Models/All/Scenarios/"))
{ 
    system(("$FIG_Config::bin/run_scenarios","All"));
}
else { closedir(GENO_SCEN);  }


my %peg_to_scenario = %{model::predict_pegs_used($genome_id)};

foreach my $peg (sort keys %peg_to_scenario)
{
    foreach (@{$peg_to_scenario{$peg}})
    {
	print $peg."\t".$_."\n";
    }
}

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