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Revision 1.3 - (download) (as text) (annotate)
Mon Dec 5 18:56:38 2005 UTC (13 years, 11 months ago) by olson
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, rast_rel_2008_06_18, myrast_rel40, rast_rel_2008_06_16, mgrast_dev_05262011, rast_rel_2008_12_18, mgrast_dev_04082011, rast_rel_2008_07_21, rast_rel_2010_0928, rast_2008_0924, mgrast_version_3_2, mgrast_dev_12152011, rast_rel_2008_04_23, mgrast_dev_06072011, rast_rel_2008_09_30, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, caBIG-05Apr06-00, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, mgrast_rel_2008_0924, mgrast_rel_2008_1110_v2, rast_rel_2009_02_05, rast_rel_2011_0119, mgrast_rel_2008_0625, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, rast_rel_2008_10_09, mgrast_dev_04012011, rast_release_2008_09_29, mgrast_rel_2008_0806, mgrast_rel_2008_0923, mgrast_rel_2008_0919, rast_rel_2009_07_09, rast_rel_2010_0827, mgrast_rel_2008_1110, myrast_33, rast_rel_2011_0928, rast_rel_2008_09_29, mgrast_rel_2008_0917, rast_rel_2008_10_29, mgrast_dev_04052011, mgrast_dev_02222011, caBIG-13Feb06-00, rast_rel_2009_03_26, mgrast_dev_10262011, rast_rel_2008_11_24, rast_rel_2008_08_07, HEAD
Changes since 1.2: +17 -0 lines
Add license words.

#
# Copyright (c) 2003-2006 University of Chicago and Fellowship
# for Interpretations of Genomes. All Rights Reserved.
#
# This file is part of the SEED Toolkit.
# 
# The SEED Toolkit is free software. You can redistribute
# it and/or modify it under the terms of the SEED Toolkit
# Public License. 
#
# You should have received a copy of the SEED Toolkit Public License
# along with this program; if not write to the University of Chicago
# at info@ci.uchicago.edu or the Fellowship for Interpretation of
# Genomes at veronika@thefig.info or download a copy from
# http://www.theseed.org/LICENSE.TXT.
#

# usage: pp < input > output.html

# input is
#
# given-genome (number)
# //
# set1 genomes
# //
# set2 genomes
# //

$/ = "//\n";
if ((@tmp = &get) && (@tmp == 1))
{
    $given = $tmp[0];
    if ((@set1 = &get) && (@set1 > 0))
    {
	if ((@set2 = &get) && (@set2 > 0))
	{
	    $ENV{"REQUEST_METHOD"} = "GET";
	    $ENV{"QUERY_STRING"} = "given=$given&" . join("&",map { "$_=set1" } @set1) . "&" . join("&",map { "$_=set2" } @set2);
	    @tmp = `$FIG_Config::fig/CGI/sigs.cgi`;
	    print join("",@tmp);
	}
	else
	{
	    print STDERR "Could not determine set2\n";
	}
    }
    else
    {
	print STDERR "Could not determine set1\n";
    }
}
else
{
    print STDERR "Could not determine given\n";
}

sub get {
    my($line);

    if ($line = <STDIN>)
    {
	chomp $line;
	return map { ($_ =~ /^(\d+\.\d+)/) ? $1 : () } split(/\n/,$line);
    }
    return ();
}

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