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1 : olson 1.2 #
2 :     # Copyright (c) 2003-2006 University of Chicago and Fellowship
3 :     # for Interpretations of Genomes. All Rights Reserved.
4 :     #
5 :     # This file is part of the SEED Toolkit.
6 :     #
7 :     # The SEED Toolkit is free software. You can redistribute
8 :     # it and/or modify it under the terms of the SEED Toolkit
9 :     # Public License.
10 :     #
11 :     # You should have received a copy of the SEED Toolkit Public License
12 :     # along with this program; if not write to the University of Chicago
13 :     # at info@ci.uchicago.edu or the Fellowship for Interpretation of
14 :     # Genomes at veronika@thefig.info or download a copy from
15 :     # http://www.theseed.org/LICENSE.TXT.
16 :     #
17 :    
18 : overbeek 1.1 use FIG;
19 :     my $fig = new FIG;
20 :    
21 :     # usage: possibly_truncated [-v] < PEG > PEG
22 :    
23 :     $v = ((@ARGV > 0) && ($ARGV[0] =~ /^-v/i));
24 :    
25 :     while ($_ = <STDIN>)
26 :     {
27 :     if (($_ =~ /(fig\|\d+\.\d+\.peg\.\d+)$/) &&
28 :     ($id = $1) &&
29 :     (($v && (! $fig->possibly_truncated($id))) ||
30 :     ((! $v) && $fig->possibly_truncated($id))))
31 :     {
32 :     print $_;
33 :     }
34 :     }

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