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Revision 1.1 - (download) (as text) (annotate)
Fri Mar 27 22:49:35 2009 UTC (10 years, 10 months ago) by overbeek
Branch: MAIN
CVS Tags: mgrast_dev_08112011, rast_rel_2009_05_18, mgrast_dev_08022011, rast_rel_2014_0912, myrast_rel40, mgrast_dev_05262011, mgrast_dev_04082011, rast_rel_2010_0928, mgrast_version_3_2, mgrast_dev_12152011, mgrast_dev_06072011, rast_rel_2009_0925, rast_rel_2010_0526, rast_rel_2014_0729, mgrast_dev_02212011, rast_rel_2010_1206, mgrast_release_3_0, mgrast_dev_03252011, rast_rel_2010_0118, rast_rel_2011_0119, mgrast_release_3_0_4, mgrast_release_3_0_2, mgrast_release_3_0_3, mgrast_release_3_0_1, mgrast_dev_03312011, mgrast_release_3_1_2, mgrast_release_3_1_1, mgrast_release_3_1_0, mgrast_dev_04132011, mgrast_dev_04012011, rast_rel_2009_07_09, rast_rel_2010_0827, myrast_33, rast_rel_2011_0928, mgrast_dev_04052011, mgrast_dev_02222011, mgrast_dev_10262011, HEAD
choose genes from candidates

use strict;

use PickFeatureSet;

#  pick_feature_set
#
#  type \t id \t location \t score
#

use Data::Dumper;
my @tuples = map { chomp; my($type,$loc,$sc,%hash) = split(/\t/,$_); 
	           [$type,$loc,$sc,\%hash]
		 } <STDIN>;

my @called = &PickFeatureSet::pick_feature_set(\@tuples,{});
foreach my $tuple ( @called ) 
{ 
    my($type,$loc,$scr,$extra) = @$tuple;
    print join("\t",($type,$loc,$scr,map { $_ => $extra->{$_} }
		                     grep { ! ref($extra->{$_}) }
		                     sort keys(%$extra)
                    )
              ),"\n";
}


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