[Bio] / FigKernelScripts / pg_roles_in_some_but_not_X.pl Repository:
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revision 1.5, Wed Feb 27 22:44:12 2013 UTC revision 1.6, Fri Mar 1 15:56:19 2013 UTC
# Line 9  Line 9 
9    
10  if ((! $rc) || (! -d $dataD)) { print STDERR $usage; exit }  if ((! $rc) || (! -d $dataD)) { print STDERR $usage; exit }
11    
12  my %anno = map { chop; ($_ => 1) } `cat $dataD/anno.seed`;  my %anno;
13    if (-s "$dataD/anno.seed")
14    {
15        %anno = map { chop; ($_ => 1) } `cat $dataD/anno.seed`;
16    }
17    else
18    {
19        print STDERR "NOTE: you have not included any ASEED genomes in a file $dataD/anno.seed\n";
20    }
21    
22  my$peg_to_func                = &load_funcs($dataD);  my$peg_to_func                = &load_funcs($dataD);
23  my($peg_to_seq,$seq_to_pegs)  = &load_seqs($dataD);  my($peg_to_seq,$seq_to_pegs)  = &load_seqs($dataD);

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