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1 : overbeek 1.1 #
2 : olson 1.3 # Copyright (c) 2003-2006 University of Chicago and Fellowship
3 :     # for Interpretations of Genomes. All Rights Reserved.
4 :     #
5 :     # This file is part of the SEED Toolkit.
6 :     #
7 :     # The SEED Toolkit is free software. You can redistribute
8 :     # it and/or modify it under the terms of the SEED Toolkit
9 :     # Public License.
10 :     #
11 :     # You should have received a copy of the SEED Toolkit Public License
12 :     # along with this program; if not write to the University of Chicago
13 :     # at info@ci.uchicago.edu or the Fellowship for Interpretation of
14 :     # Genomes at veronika@thefig.info or download a copy from
15 :     # http://www.theseed.org/LICENSE.TXT.
16 :     #
17 :    
18 :     #
19 : overbeek 1.1 use FIG;
20 :     $fig = new FIG;
21 :    
22 :     # usage: peg_to_subsystems.pl < PEG > PEG-FUNC-SUBSYSTEM-ROLE
23 :    
24 :     while (defined($_ = <STDIN>))
25 :     {
26 :     if ($_ =~ /(fig\|\d+\.\d+\.peg\.\d+)$/)
27 :     {
28 :     $peg = $1;
29 :     $func = $fig->function_of($peg);
30 :     foreach $x ($fig->subsystems_for_peg($peg))
31 :     {
32 :     ($subsystem,$role) = @$x;
33 : overbeek 1.2 $curator = $fig->subsystem_curator($subsystem);
34 :     $curator =~ s/^master://;
35 :     print "$peg\t$func\t$subsystem\t$role\t$curator\n";
36 : overbeek 1.1 }
37 :     }
38 :     }

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